fix again

guigolab · Oct 11, 2024 · e97e2d4 · e97e2d4
1 parent 5a65090
commit e97e2d4
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/.github/workflows/map_tables.yml b/.github/workflows/map_tables.yml
@@ -53,17 +53,14 @@ jobs:
                     print accession "\t" filename "\t" $2;
                 }' > "$output"
 
-                # Show the output file content for debugging purposes
-                cat "$output"
-
             - name: Get NCBI Assemblies Metadata
               run: |
 
                 tmp=tmp.txt
 
                 cat "${{env.MERGED_TABLE}}" | awk -F'\t' '{print $1}' > "$tmp"
                 
-                ./datasets summary genome genome --inputfile "$tmp" --as-json-lines |
+                ./datasets summary genome genome accession --inputfile "$tmp" --as-json-lines |
                 ./dataformat tsv genome --fields "${{env.FIELDS}}" | 
                 tail -n +2 | head -n 10 > "${{env.NCBI_ACCESSIONS}}"