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launch working ncbi pipeline
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emiliorighi committed Oct 11, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/ncbi_all.yml
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Expand Up @@ -60,7 +60,7 @@ jobs:
./datasets summary genome taxon "${{env.TAXID}}" --assembly-level chromosome,complete --annotated --as-json-lines |
./dataformat tsv genome --fields "${{env.FIELDS}}" |
tail -n +2 | head -n 10 > "${{env.NCBI_ACCESSIONS}}"
tail -n +2 > "${{env.NCBI_ACCESSIONS}}"
cat "${{env.NCBI_ACCESSIONS}}"
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