clean ncbi pipeline

guigolab · Oct 11, 2024 · 7a77701 · 7a77701
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commit 7a77701
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Showing 5 changed files with 3 additions and 18 deletions.
diff --git a/.github/workflows/ncbi_all.yml b/.github/workflows/ncbi_all.yml
@@ -78,6 +78,7 @@ jobs:
           done < "${{env.NCBI_ACCESSIONS}}"
           
           rm "${{env.NCBI_ACCESSIONS}}"
+          rm "${{env.EXISTING_ACCESSIONS}}"
 
       - name: Get FTP Directories
         run: |
@@ -136,6 +137,8 @@ jobs:
           done < "${{env.DIRS}}"
 
           rm "${{env.DIRS}}"
+          rm datasets
+          rm dataformat
 
       - name: Commit & Push changes
         uses: actions-js/push@master

diff --git a/dataformat b/dataformat
diff --git a/datasets b/datasets
diff --git a/existing_accessions.tsv b/existing_accessions.tsv
diff --git a/ncbi.tsv b/ncbi.tsv