Fix

guigolab · Mar 17, 2020 · 1eb72aa · 1eb72aa
1 parent d982c86
commit 1eb72aa
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/main_configuration.config b/main_configuration.config
@@ -6,7 +6,7 @@ params {
  evalue = "0.00001"
  blastFile = ""
  diamond = "false"
- blastDbpath = "/nfs/db/ncbi/201908/blastdb/db/nr"
+ blastDbPath = "/nfs/db/ncbi/201908/blastdb/db/nr"
  speciesName = "P.vulgaris"
  chunkSize = 25
  chunkWebSize = 100

diff --git a/pipeline.nf b/pipeline.nf
@@ -114,7 +114,7 @@ log.info "General parameters"
 log.info "------------------"
 log.info "Protein sequence file        : ${params.proteinFile}"
 log.info "Annotation file              : ${params.gffFile}"
-if ( ${params.blastFile} != "" ) {
+if ( params.blastFile != "" ) {
 log.info "BLAST results file           : ${params.blastFile}"
 }
 log.info "Species name                  : ${params.speciesName}"