Ras/NF1 Classifier Submission - PanCanAtlas Cell Reports

The code base associated with the 2/23/18 submission to Cell Reports

Dimensionality Reduction Evaluation

This release is associated with submission to the 2017 NIPS conference where we use the supervised classifier evaluation software presented in this repository to evaluate the performance of several dimensionality reduction techniques. Included in the evaluation are tybalt models as generated in part of the tybalt release v0.1.3.

The bash script outlining the procedure for this analysis is presented here

Ras Pathway Activation Classifier (Manuscript)

This release focuses on analyses and summary figures for training and evaluating a Ras classifier as part of the Ras/NF1 TCGA analysis group. An update for submission for publication.

Ras Pathway Activation Classifier

This release focuses on analyses and summary figures for training and evaluating a Ras classifier as part of the Ras/NF1 TCGA analysis group.

DNA Damage Response TP53 Classifier

Code base to build Pan Cancer classifiers for any combination of genes or cancer types. This release focuses on analyses and summary figures for a TP53 classifier for the DNA Damage Response TCGA working group.