ci: clone with submodules #667
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| name: ci | |
| env: | |
| GEMINI_CIROOT: ~/ci | |
| CMAKE_BUILD_TYPE: Release | |
| CMAKE_INSTALL_PREFIX: ~/libgem | |
| GEMINI_ROOT: ~/libgem | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| # GEMINI_ROOT is used to find Gemini3D by PyGemini | |
| on: | |
| push: | |
| paths: | |
| - "**.py" | |
| - ".github/workflows/ci.yml" | |
| - "src/gemini3d/libraries.json" | |
| - "!scripts/**" | |
| - "!example/**" | |
| - "!Examples/**" | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 3 | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| include: | |
| - os: macos-latest | |
| python-version: "3.12" | |
| - os: windows-latest | |
| python-version: "3.12" | |
| name: Lint ${{ matrix.os }} Python ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: python -m pip install -e .[lint] | |
| timeout-minutes: 2 | |
| - run: flake8 | |
| - run: mypy | |
| linux-macos: | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest] | |
| include: | |
| - os: macos-latest | |
| python-version: '3.12' | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} Python ${{ matrix.python-version }} | |
| env: | |
| FC: gfortran-13 | |
| steps: | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout GemGI (for simulation config.nml inputs) | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: gemini3d/gemci | |
| path: ${{ github.workspace }}/gemci | |
| - name: Install Prereqs (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt update | |
| sudo apt install --no-install-recommends libopenmpi-dev openmpi-bin libhdf5-dev ninja-build | |
| - name: Install Prereqs (Macos) | |
| if: runner.os == 'macOS' | |
| run: brew install ninja open-mpi hdf5 scalapack | |
| - name: Cache install Gemini3D | |
| id: cache-gemini | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ${{ env.CMAKE_INSTALL_PREFIX }} | |
| key: ${{ runner.os }}-gemini-${{ hashFiles('gemini3d/CMakeLists.txt') }} | |
| # weak check that gemini3d has changed since last cache update | |
| - name: Checkout Gemini3D | |
| if: steps.cache-gemini.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: gemini3d/gemini3d | |
| path: gemini3d | |
| submodules: true | |
| - name: non-cache Install Gemini3D | |
| if: steps.cache-gemini.outputs.cache-hit != 'true' | |
| timeout-minutes: 15 | |
| run: | | |
| cmake -B build | |
| cmake --build build | |
| cmake --install build | |
| working-directory: gemini3d | |
| - name: Git Checkout ${{ github.action_repository }} | |
| uses: actions/checkout@v4 | |
| - name: Install Python packages | |
| run: python -m pip install .[tests,plots] | |
| timeout-minutes: 5 | |
| # transient CI download speed | |
| - name: Unit and Integration Tests | |
| run: pytest | |
| timeout-minutes: 15 | |
| env: | |
| GEMCI_ROOT: ${{ github.workspace }}/gemci | |
| # codecov coverage | |
| # - run: pip install codecov pytest-cov | |
| # - run: pytest --cov --cov-report=xml | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v1 |