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New Evaluating Reference Data for Bulk RNA Deconvolution tutorial #5549

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New Evaluating Reference Data for Bulk RNA Deconvolution tutorial #5549

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Commits on Oct 5, 2024

  1. add initial tutorial

    @hexhowells
    hexhowells committed Oct 5, 2024
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  2. Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Oct 5, 2024
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  3. add introduction and agenda

    @hexhowells
    hexhowells committed Oct 5, 2024
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Commits on Oct 15, 2024

  1. update processing single-cell data section

    @hexhowells
    hexhowells committed Oct 15, 2024
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  2. Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Oct 15, 2024
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  3. update visualise results section

    @hexhowells
    hexhowells committed Oct 15, 2024
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  4. update lformatting for the lst of fields parameterrs

    @hexhowells
    hexhowells committed Oct 15, 2024
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  5. remove newline in scatterplot tool metadata

    @hexhowells
    hexhowells committed Oct 15, 2024
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  6. add scatterplot tool nstrution forrNNLS

    @hexhowells
    hexhowells committed Oct 15, 2024
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  7. re-order remove header tool before combine collections

    @hexhowells
    hexhowells committed Oct 15, 2024
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Commits on Nov 4, 2024

  1. Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Nov 4, 2024
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  2. update visualisation and metrics section

    @hexhowells
    hexhowells committed Nov 4, 2024
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Commits on Nov 5, 2024

  1. Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Nov 5, 2024
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Commits on Nov 8, 2024

  1. add equation diagrams

    @hexhowells
    hexhowells committed Nov 8, 2024
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  2. Merge branch 'deconvolution-evaluation-tutorial' of https://github.co… 

    …m/hexhowells/training-material into deconvolution-evaluation-tutorial
    @hexhowells
    hexhowells committed Nov 8, 2024
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  3. add compare scatterplots image

    @hexhowells
    hexhowells committed Nov 8, 2024
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  4. update tutorial

    @hexhowells
    hexhowells committed Nov 8, 2024
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  5. add answer key to scatterplot question

    @hexhowells
    hexhowells committed Nov 8, 2024
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  6. fix advanced cut tool parameter

    @hexhowells
    hexhowells committed Nov 8, 2024
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  7. add explaination of RMSE

    @hexhowells
    hexhowells committed Nov 8, 2024
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  8. add metric analysis

    @hexhowells
    hexhowells committed Nov 8, 2024
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  9. add violin plot tools

    @hexhowells
    hexhowells committed Nov 8, 2024
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  10. change scatter plot names

    @hexhowells
    hexhowells committed Nov 8, 2024
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Commits on Nov 11, 2024

  1. add keys to metric equations

    @hexhowells
    hexhowells committed Nov 11, 2024
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  2. add question box for violin plots

    @hexhowells
    hexhowells committed Nov 11, 2024
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Commits on Nov 12, 2024

  1. update metrics workflow

    @hexhowells
    hexhowells committed Nov 12, 2024
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  2. minor updates to intro

    @hexhowells
    hexhowells committed Nov 12, 2024
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  3. minor updates to get data section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  4. add inspect single-cell data section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  5. standardise header capitalisation

    @hexhowells
    hexhowells committed Nov 12, 2024
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  6. update the process sc data section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  7. update pseudo-bulk section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  8. update pseudo-bulk section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  9. update pseudo-bulk section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  10. update deconvolution section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  11. update visualise results section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  12. add some anaysis to the visualisation section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  13. update scatter plot section

    @hexhowells
    hexhowells committed Nov 12, 2024
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  14. add scatter and violin plots

    @hexhowells
    hexhowells committed Nov 12, 2024
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Commits on Nov 13, 2024

  1. update scatter plot section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  2. update violin plot section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  3. minor update to scatter plot section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  4. minor update to metric analyis section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  5. update key points

    @hexhowells
    hexhowells committed Nov 13, 2024
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  6. add conclusion

    @hexhowells
    hexhowells committed Nov 13, 2024
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  7. add standard deviation section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  8. add congratulations icon

    @hexhowells
    hexhowells committed Nov 13, 2024
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  9. remove standard deviation section

    @hexhowells
    hexhowells committed Nov 13, 2024
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  10. update workflow links

    @hexhowells
    hexhowells committed Nov 13, 2024
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  11. add embedded workflows

    @hexhowells
    hexhowells committed Nov 13, 2024
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Commits on Nov 14, 2024

  1. minor updates/typo fixes

    @hexhowells
    hexhowells committed Nov 14, 2024
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  2. minor updates

    @hexhowells
    hexhowells committed Nov 14, 2024
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Commits on Nov 15, 2024

  1. minor updates

    @hexhowells
    hexhowells committed Nov 15, 2024
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  2. minor updates

    @hexhowells
    hexhowells committed Nov 15, 2024
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Commits on Nov 18, 2024

  1. update second workflow

    @hexhowells
    hexhowells committed Nov 18, 2024
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  2. update results table

    @hexhowells
    hexhowells committed Nov 18, 2024
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  3. update scatter plot size

    @hexhowells
    hexhowells committed Nov 18, 2024
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  4. update plot images

    @hexhowells
    hexhowells committed Nov 18, 2024
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  5. update scatter plot questions

    @hexhowells
    hexhowells committed Nov 18, 2024
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  6. update the violin plot questions

    @hexhowells
    hexhowells committed Nov 18, 2024
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  7. minor update

    @hexhowells
    hexhowells committed Nov 18, 2024
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Commits on Nov 19, 2024

  1. add punctuation

    @hexhowells
    hexhowells committed Nov 19, 2024
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  2. Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Nov 19, 2024
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Commits on Nov 20, 2024

  1. fix linting error

    @hexhowells
    hexhowells committed Nov 20, 2024
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  2. Merge branch 'deconvolution-evaluation-tutorial' of https://github.co… 

    …m/hexhowells/training-material into deconvolution-evaluation-tutorial
    @hexhowells
    hexhowells committed Nov 20, 2024
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Commits on Nov 26, 2024

  1. Merge branch 'main' into deconvolution-evaluation-tutorial

    @nomadscientist
    nomadscientist authored Nov 26, 2024
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Commits on Nov 27, 2024

  1. possibly fix linting issue

    @hexhowells
    hexhowells committed Nov 27, 2024
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  2. Merge branch 'deconvolution-evaluation-tutorial' of https://github.co… 

    …m/hexhowells/training-material into deconvolution-evaluation-tutorial
    @hexhowells
    hexhowells committed Nov 27, 2024
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  3. Merge branch 'main' into deconvolution-evaluation-tutorial

    @hexhowells
    hexhowells authored Nov 27, 2024
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