seqstats

Biological Sequence Statistics in R

The seqstats package provides a comprehensive framework for biological sequence statistics to allow researchers to design null hypotheses and random controls when performing exploratory genomics studies.

Install

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install()
# install package dependencies
BiocManager::install("Biostrings")
# install.packages("devtools")
# install the current version of seqstats to your system
devtools::install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

Tutorials

The following tutorials will introduce you to the functionality of seqstats :

• Sequence Statistics

Install on Windows

# On Windows, this won't work - see ?build_github_devtools
install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

# When working with Windows, first you need to install the
# R package: rtools -> install.packages("rtools")

# Afterwards you can install devtools -> install.packages("devtools")
# and then you can run:

devtools::install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

# and then call it from the library
library("seqstats", lib.loc = "C:/Program Files/R/R-3.1.1/library")