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Converted project structure to maven standards #12

Merged
merged 35 commits into from
Jul 13, 2020
Merged

Converted project structure to maven standards #12

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5c57e59
started conversion to maven
eikept May 2, 2020
20aedde
added missing folders and files
eikept May 2, 2020
a181ace
Updated Design and Content of Documentation websites (does not work f…
eikept May 4, 2020
eee1cd0
Maven license report now works + minor graphical updates
eikept May 6, 2020
4c88686
Created JavaDoc
eikept May 11, 2020
9479db4
Added JavaDoc files
eikept May 11, 2020
c3fe4f2
Recolored JavaDoc and removed Version tags with $Rev$
eikept May 14, 2020
0eb08e0
Now new JavaDoc is in docs folder
eikept May 14, 2020
a48014b
Updated travis.yml
eikept May 14, 2020
153ec41
Updated travis.yml again
eikept May 14, 2020
2be0b90
Updated travis.yml (3)
eikept May 14, 2020
1687d4b
Updated travis.yml (4)
eikept May 14, 2020
cf34870
Updated travis.yml (5)
eikept May 14, 2020
cad5383
Updated travis.yml (5)
eikept May 14, 2020
af80c17
Updated travis.yml (6)
eikept May 14, 2020
a0ef50d
Updated travis.yml (7)
eikept May 14, 2020
44b4e02
Updated travis.yml (8)
eikept May 14, 2020
721e6a8
Updated travis.yml (9)
eikept May 14, 2020
09ec18b
Updated travis.yml (10)
eikept May 14, 2020
478c5c4
Trying to get travis ci to run
eikept May 14, 2020
f4e9e8b
Trying to get travis ci to run (2)
eikept May 14, 2020
1360946
site is now also generated by travis ci
eikept May 18, 2020
f692cf5
Partially fixed errors in SqueezerTests.java and SABIORKTest.java
eikept May 27, 2020
c4c5b34
Fixed file extension issue.
eikept May 28, 2020
002681d
Removed libSBML support and updated JSBML to 1.5.
eikept Jun 1, 2020
71a02c2
Some changes to the Website.
eikept Jun 1, 2020
ba9c65d
Changes to API requests to SABIO-RK.
eikept Jun 5, 2020
fa7e650
Test are now not skipped on travis.
eikept Jun 5, 2020
0caf776
Fixed most tests and updated test models to use SBML L3 V2
eikept Jun 15, 2020
86bf288
Currently failing kinetics test are not run on travis.
eikept Jun 15, 2020
d2390dd
Failing kinetics tests are ignored (for now).
eikept Jun 15, 2020
6bded6b
Updated Website, removed unnecessary test and ignoring part of testMo…
eikept Jul 9, 2020
7e9e76f
Updated expected values from SABIORK.
eikept Jul 9, 2020
44dfb57
Updated test xmls.
eikept Jul 9, 2020
4fd7871
Changes to pom.xml
eikept Jul 9, 2020
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10 changes: 10 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,13 @@ build/
doc/api
.project
*.log

# IntelliJ specific directories
.idea/SBMLsqueezer.iml
.idea/libraries
.idea/modules.xml
.idea/workspace.xml

# Target directory
core/target/
celldesigner/target/
5 changes: 2 additions & 3 deletions .travis.yml
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Expand Up @@ -5,7 +5,6 @@ jdk:
- oraclejdk8
notifications:
email: false
install:
ant jar_incl-libs
script:
- travis_wait java -cp dist/SBMLsqueezer-2.1.1/SBMLsqueezer_v2.1.1.jar:lib/junit-4.8.jar org.junit.runner.JUnitCore org.sbml.squeezer.test.cases.SBMLsqueezerTestSuite
- mvn clean compile package
- mvn site
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