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27 Open 33 Closed
27 Open 33 Closed
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Issues list

Excluding 1st dimension when computing SEACells on ATAC data
#73 opened Oct 9, 2024 by kjtreese
Error fitting model on Jupyter lab via HPC cluster
#72 opened Sep 29, 2024 by li-xuyang28
Error when model.construct_kernel_matrix: can SEACells be applied in python command line, not just in Jupyter?
#71 opened Sep 1, 2024 by LiuCanidk
How to run SEACells efficiently on large-scale dataset
#70 opened Jul 22, 2024 by koh2ng0
2
What is the actual formula to construct the affinity kernel matrix?
#69 opened Jul 15, 2024 by caodudu
1
CUDA error while running "model.fit"
#66 opened May 9, 2024 by NekoClaviS
Spurious metacell
#65 opened May 6, 2024 by yxsee
The data cannot be downloaded
#63 opened Apr 24, 2024 by cfzgg
1
Handling metacell creation for rare cell types (<< 75 cells)
#61 opened Apr 15, 2024 by uqzqiao
maxFragmentLength=147
#60 opened Apr 5, 2024 by Aya-Balbaa
Custom Neighborhood Graph for Metacells
#59 opened Apr 1, 2024 by shahrozeabbas
No speed increase was observed when use_gpu=True
#58 opened Mar 28, 2024 by OMIC-coding
1
Aggregation of expression data ends up in matrix filled with NaN's
#57 opened Jan 30, 2024 by zvittorio
5
Scale or not scale be more suitable for computation of SEACells?
#56 opened Jan 4, 2024 by NPTL1201
wonder why the @parm ceiling can be set to 10^9
#54 opened Nov 2, 2023 by chenc327
[Question] Algorithm for PWM computation
#53 opened Oct 26, 2023 by josephineyates
Fail to install seacells via conda due to conflicts in environment.yaml
#52 opened Oct 5, 2023 by ChangSuBiostats
2
cell-cell affinity matrix
#49 opened Jul 15, 2023 by ytliu01
1
Reproducibility issue
#48 opened Jul 8, 2023 by evaham1
2
Renaming the Seacells
#46 opened Jun 7, 2023 by Gavin-Lijy
1
Many cells have zero non-trivial (>0.1) assignments
#43 opened May 30, 2023 by simozhou
1
Issue with model.initialize_archetypes()
#41 opened May 18, 2023 by iamsalil
4
Way too strict dependency pins
#39 opened May 5, 2023 by Zethson
3
MemoryError when fitting model.fit
#34 opened Apr 3, 2023 by tatyana-perlova
10
model.fit hangs indefinitely
#18 opened Jul 25, 2022 by smorabit
12
ProTip! Follow long discussions with comments:>50.