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Fix type hinting error in ENVI.py #58

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merged 1 commit into from
May 7, 2024
Merged

Fix type hinting error in ENVI.py #58

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6 changes: 1 addition & 5 deletions scenvi/ENVI.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
import pandas as pd
import scanpy as sc
import sklearn.neighbors
import tensorflow_probability.substrates.jax as jax_prob
import tensorflow_probability.substrates.jax as jax_prob # type: ignore
from flax import linen as nn
from jax import jit, random
from tqdm import trange
Expand Down Expand Up @@ -648,11 +648,7 @@ def infer_niche_covet(self):
"""
Predict COVET representation for single-cell data

<<<<<<< HEAD
:return: nothing adds 'COVET_SQRT' and 'COVET' to self.sc_data.obsm
=======
:return: nothing, adds 'COVET_SQRT' and 'COVET' to self.spatial_data.obsm
>>>>>>> main
"""

self.sc_data.obsm["COVET_SQRT"] = self.decode_cov(
Expand Down
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