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  1. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Forked from MarioniLab/EmbryoTimecourse2018

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 1

  2. aertslab/scenicplus aertslab/scenicplus Public

    SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

    Jupyter Notebook 191 31

  3. aertslab/pycisTopic aertslab/pycisTopic Public

    pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

    Jupyter Notebook 59 12

  4. Teichlab/bin2cell Teichlab/bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 61 2