Extra script: annotate Orthogroups (HOG) from fasta descriptions #434
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ViriatoII
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Cool! I updated my script accordingly. https://binfgitlab.unibe.ch/troder/orthofinder_tools/-/commit/1262643b53ed7f163f8017407fd0d6f777a5b946 |
MrTomRod
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Mar 21, 2022
…l/434) - compatible with new N0.tsv structure - small tweek to ignore proteins annotated AbInitio with maker, which don't have useful information, and to be resilient to gene names missing in the corresponding fastas
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Hi
I edited the script of @MrTomRod to be applicable to the new N0.tsv structure of Orthofinder. I also made a small tweek to ignore proteins annotated AbInitio with maker, which don't have useful information, and to be resilient to gene names missing in the corresponding fastas.
Asked for in:
#362
#373
Massive thanks to @MrTomRod
The script is here: annotate_N0.txt (.txt due to github requirements, I've never done a pull request before)
EDIT: Oh, I notice now that you wanted to remove dependencies. Sorry, I didn't do that!
Cheers,
Ricardo