refactor: Remove unused analysis

dalmolingroup · Jul 22, 2023 · 63030b3 · 63030b3
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diff --git a/README.md b/README.md
@@ -3,14 +3,12 @@
 This repository contains a differential gene expression (DGE) analysis for three distinct datasets
 of cardiomyocite expression after Trastuzumab treatment.
 The results of the different DGEs were then used for a meta-analysis.
-Finally, the significant results from this meta-analysis were then used to perform a functional enrichment.
 
 ## Analysis Notebooks
 
 - [RNA-Seq](./reports/RNASeq.html) - [Source](./analysis/RNASeq.Rmd)
 - [GSE107385](./reports/GSE107385.html) - [Source](./analysis/GSE107385.Rmd)
 - [Select Genes](./reports/select_genes.html) - [Source](./analysis/select_genes.Rmd)
-- [Functional Enrichment](./reports/functional_enrichment.html) - [Source](./analysis/functional_enrichment.Rmd)
 
 ## Repository Structure
 
@@ -30,8 +28,6 @@ Finally, the significant results from this meta-analysis were then used to perfo
     - DGE for the other two RNA-Seq datasets
   - select_genes.Rmd
     - Select genes associated to mitophagy, autophagy and mitochondrial biogenesis
-  - functional_enrichment.Rmd
-    - Functional enrichment analysis on the meta-analysis results
 - `data`
   - `Plataformas.csv`
     - Original metadata for the three studies

diff --git a/analysis/functional_enrichment.Rmd b/analysis/functional_enrichment.Rmd
diff --git a/reports/functional_enrichment.html b/reports/functional_enrichment.html
diff --git a/results/go_barplot.pdf b/results/go_barplot.pdf
diff --git a/results/go_dotplot.pdf b/results/go_dotplot.pdf
diff --git a/results/kegg_barplot.pdf b/results/kegg_barplot.pdf
diff --git a/results/kegg_dotplot.pdf b/results/kegg_dotplot.pdf
diff --git a/results/metanalysis_go_enrichment.csv b/results/metanalysis_go_enrichment.csv