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Update README.md
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added note on the -l option in diffSplice.: the dPSI threshold is implemented only in the empirical mode.
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EduEyras authored Feb 14, 2022
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Expand Up @@ -549,7 +549,7 @@ List of options available:

- **-a** | **--area**: Integer indicating the number of points in the local area of the delta PSI - average TPM distribution. (Default: 1000).

- **-l** | **--lower-bound**: Lower-bound for the absolute delta PSI value to test for significance. Events with less than this delta PSI will not be tested. (Default: 0).
- **-l** | **--lower-bound**: Lower-bound for the absolute delta PSI value to test for significance. Events with less than this delta PSI will not be tested. (Default: 0). (Note: it is only implemented in the empirical method).

- **-pa** | **--paired**: Indicates if replicates across conditions are paired.

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