Skip to content

Commit

Permalink
Merge pull request #1090 from cdcepi/tasks_config_update
Browse files Browse the repository at this point in the history 
update config files in preparation for 2024/25 season
  • Loading branch information
@smathis14
smathis14 authored Aug 28, 2024
2 parents eae860a + f313725 commit dde0d62
Show file tree
Hide file tree
Showing 2 changed files with 285 additions and 5 deletions.
11 changes: 7 additions & 4 deletions hub-config/admin.json
View file
Original file line number Diff line number Diff line change
@@ -1,14 +1,17 @@
{
"schema_version": "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v2.0.1/admin-schema.json",
"schema_version": "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v3.0.1/admin-schema.json",
"name": "US CDC FluSight",
"maintainer": "US CDC",
"contact": {
"name": "Rebecca Borchering",
"email": "xhq2@cdc.gov"
},
"repository_host": "GitHub",
"repository_url": "https://github.com/cdcepi/FluSight-forecast-hub",
"file_format": ["csv"],
"repository": {
"host": "github",
"owner": "cdcepi",
"repository": "FluSight-forecast-hub"
},
"file_format": ["csv", "parquet"],
"timezone": "US/Eastern",
"model_output_dir": "model-output",
"cloud": {
Expand Down
279 changes: 278 additions & 1 deletion hub-config/tasks.json
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"schema_version": "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v2.0.1/tasks-schema.json",
"schema_version": "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v3.0.1/tasks-schema.json",
"rounds": [
{
"round_id_from_variable": true,
Expand Down Expand Up @@ -269,6 +269,19 @@
"type": "double",
"minimum": 0
}
},
"sample": {
"output_type_id_params": {
"is_required": false,
"type": "integer",
"min_samples_per_task": 100,
"max_samples_per_task": 100,
"compound_taskid_set" : ["reference_date", "location", "target"]
},
"value": {
"type": "integer",
"minimum": 0
}
}
},
"target_metadata": [
Expand All @@ -287,6 +300,270 @@
"time_unit": "week"
}
]
},
{
"task_ids": {
"reference_date": {
"required": null,
"optional": [
"2023-10-07", "2023-10-14", "2023-10-21", "2023-10-28", "2023-11-04",
"2023-11-11", "2023-11-18", "2023-11-25", "2023-12-02",
"2023-12-09", "2023-12-16", "2023-12-23", "2023-12-30",
"2024-01-06", "2024-01-13", "2024-01-20", "2024-01-27",
"2024-02-03", "2024-02-10", "2024-02-17", "2024-02-24",
"2024-03-02", "2024-03-09", "2024-03-16", "2024-03-23",
"2024-03-30", "2024-04-06", "2024-04-13", "2024-04-20",
"2024-04-27", "2024-05-04", "2024-05-11"
]
},
"target": {
"required": null,
"optional": ["peak inc flu hosp"]
},
"horizon": {
"required": null,
"optional": null
},
"location": {
"required": null,
"optional": [
"US",
"01",
"02",
"04",
"05",
"06",
"08",
"09",
"10",
"11",
"12",
"13",
"15",
"16",
"17",
"18",
"19",
"20",
"21",
"22",
"23",
"24",
"25",
"26",
"27",
"28",
"29",
"30",
"31",
"32",
"33",
"34",
"35",
"36",
"37",
"38",
"39",
"40",
"41",
"42",
"44",
"45",
"46",
"47",
"48",
"49",
"50",
"51",
"53",
"54",
"55",
"56",
"72"
]
},
"target_end_date": {
"required": null,
"optional": null
}
},
"output_type": {
"quantile": {
"output_type_id": {
"required": [
0.01,
0.025,
0.05,
0.1,
0.15,
0.2,
0.25,
0.3,
0.35,
0.4,
0.45,
0.5,
0.55,
0.6,
0.65,
0.7,
0.75,
0.8,
0.85,
0.9,
0.95,
0.975,
0.99
],
"optional": null
},
"value": {
"type": "double",
"minimum": 0
}
}
},
"target_metadata": [
{
"target_id": "peak inc flu hosp",
"target_name": "incident influenza hospitalizations in the season week with the highest hospitalizations",
"target_units": "count",
"target_keys": {
"target": [
"peak inc flu hosp"
]
},
"target_type": "continuous",
"description": "This target represents the count of new hospitalizations in the week of the season with the highest reported hospitalizations.",
"is_step_ahead": false
}
]
},
{
"task_ids": {
"reference_date": {
"required": null,
"optional": [
"2023-10-07", "2023-10-14", "2023-10-21", "2023-10-28", "2023-11-04",
"2023-11-11", "2023-11-18", "2023-11-25", "2023-12-02",
"2023-12-09", "2023-12-16", "2023-12-23", "2023-12-30",
"2024-01-06", "2024-01-13", "2024-01-20", "2024-01-27",
"2024-02-03", "2024-02-10", "2024-02-17", "2024-02-24",
"2024-03-02", "2024-03-09", "2024-03-16", "2024-03-23",
"2024-03-30", "2024-04-06", "2024-04-13", "2024-04-20",
"2024-04-27", "2024-05-04", "2024-05-11"
]
},
"target": {
"required": null,
"optional": ["peak week inc flu hosp"]
},
"horizon": {
"required": null,
"optional": null
},
"location": {
"required": null,
"optional": [
"US",
"01",
"02",
"04",
"05",
"06",
"08",
"09",
"10",
"11",
"12",
"13",
"15",
"16",
"17",
"18",
"19",
"20",
"21",
"22",
"23",
"24",
"25",
"26",
"27",
"28",
"29",
"30",
"31",
"32",
"33",
"34",
"35",
"36",
"37",
"38",
"39",
"40",
"41",
"42",
"44",
"45",
"46",
"47",
"48",
"49",
"50",
"51",
"53",
"54",
"55",
"56",
"72"
]
},
"target_end_date": {
"required": null,
"optional": null
}
},
"output_type": {
"pmf": {
"output_type_id": {
"required": [
"2024-11-09", "2024-11-16", "2024-11-23",
"2024-11-30", "2024-12-07", "2024-12-14",
"2024-12-21", "2024-12-28", "2025-01-04",
"2025-01-11", "2025-01-18", "2025-01-25",
"2025-02-01", "2025-02-08", "2025-02-15",
"2025-02-22", "2025-03-01", "2025-03-08",
"2025-03-15", "2025-03-22", "2025-03-29",
"2025-04-05", "2025-04-12", "2025-04-19",
"2025-04-26", "2025-05-03", "2025-05-10",
"2025-05-17", "2025-05-24", "2025-05-31"
],
"optional": null
},
"value": {
"type": "double",
"minimum": 0,
"maximum": 1
}
}
},
"target_metadata": [
{
"target_id": "peak week inc flu hosp",
"target_name": "season week with the highest hospitalizations",
"target_units": "count",
"target_keys": {
"target": [
"peak week inc flu hosp"
]
},
"target_type": "date",
"description": "This target represents the week of the season with the highest reported hospitalizations. This is the Saturday ending the epidemic week with the highest reported hospitalization count.",
"is_step_ahead": false
}
]
}
],
"submissions_due": {
Expand Down

0 comments on commit dde0d62

Please sign in to comment.