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  1. TIMEgermline TIMEgermline Public

    Reproducibility of "Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response"

    Jupyter Notebook 5

  2. Ploc Ploc Public

    Code for analysis of protein location as a determinant of neopeptide immunogenicity

    Jupyter Notebook 3

  3. CLAIM-scAEs CLAIM-scAEs Public

    A tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.

    Jupyter Notebook 3 1

  4. PredictMEE PredictMEE Public

    This repository provides code related to our manuscript describing the use of NLP to infer missing metadata in the SRA

    Jupyter Notebook 2

  5. PSTP_bootcamp_2024 PSTP_bootcamp_2024 Public

    Materials for PSTP bootcamp

    2

  6. SCNA_score_analysis SCNA_score_analysis Public

    Code to reproduce analysis and figures from Xian et al.

    Jupyter Notebook 1

Repositories

Showing 10 of 14 repositories
  • cartercompbio/2024-MSTP-Bioinformatics-Bootcamp’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 26, 2024
  • RUNX1_SEUSS Public

    Code and data to reproduce analyses from Ozturk et al

    cartercompbio/RUNX1_SEUSS’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 11, 2024
  • PSTP_bootcamp_2024 Public

    Materials for PSTP bootcamp

    cartercompbio/PSTP_bootcamp_2024’s past year of commit activity
    2 0 0 0 Updated Apr 12, 2024
  • MHC_reliance Public

    Code to reproduce analysis for Sears et al.

    cartercompbio/MHC_reliance’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 16, 2024
  • meQTLs Public

    Code to reproduce analyses presented in Goudarzi et al

    cartercompbio/meQTLs’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 20, 2023
  • MelMHC Public

    Bruce AI-MHC-Ighty: Code and data needed to reproduce the analyses by Talwar et al. from "Autoimmune Alleles at the Major Histocompatibility Locus Modify Melanoma Susceptibility"

    cartercompbio/MelMHC’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 5, 2023
  • TIMEgermline Public

    Reproducibility of "Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response"

    cartercompbio/TIMEgermline’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Apr 2, 2023
  • TERT_adaptive_immune_score Public

    Code and data for manuscript

    cartercompbio/TERT_adaptive_immune_score’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2023
  • CLAIM-scAEs Public

    A tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.

    cartercompbio/CLAIM-scAEs’s past year of commit activity
    Jupyter Notebook 3 1 4 0 Updated Jul 17, 2022
  • Ploc Public

    Code for analysis of protein location as a determinant of neopeptide immunogenicity

    cartercompbio/Ploc’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Nov 1, 2021

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