Copy number genotyping jointly from scRNA and scATAC sequencing

A set of Pyro models and functions to infer CNA from scRNA-seq and scATAC-seq data. It comes with a companion R package that works as an interface and provides preprocessing, simulation and visualization routines.

Currently providing:

• A mixture model on segments where CNV are modelled as Categorical random variable (LatentCategorical)

To install:

$ pip install git+https://github.com/caravagnalab/CONGASp