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18 Open 49 Closed
18 Open 49 Closed
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Issues list

caveman count crashes with "corrupted size vs. prev_size" when ignore_regions_file is compressed
#123 opened Jul 12, 2024 by FMakosza
Error during mstep for whole exome sequencing data
#118 opened Jan 8, 2024 by pawanchk
1
Continuous "core dumped" errors during the M step
#117 opened Mar 14, 2023 by KANGseungseok
2
Implement.pm line 378 - species-assembly
#116 opened Mar 3, 2023 by acarbome7
Inquiry about the CaVEman option for running WGS data
#115 opened Feb 17, 2023 by KANGseungseok
Filtering fail "."
#113 opened Sep 19, 2022 by Mathieu179
Merge - Warning
#110 opened May 13, 2022 by pawanchk
Mstep - Error fetching reference sequence
#109 opened May 9, 2022 by pawanchk
1
ignore region files
#107 opened Nov 25, 2021 by onrerdogan
providing several samples for normal
#106 opened Sep 3, 2021 by husamia
1
different tumor / normal platforms could be a warning instead of an error?
#100 opened Jun 26, 2020 by jsmedmar
VCF where ref == alt
#95 opened Oct 14, 2019 by kmhernan
1.13.15: -x and -y parameters don't work in estep
#94 opened Sep 10, 2019 by zhuyezhang
1
1.13.9 - split error
#86 opened Nov 30, 2018 by WillieYu
1
1.13.5 - mstep errors - negative positions
#84 opened Sep 13, 2018 by ghost
Incorrect genotype sorting in SNP calls bug
#63 opened Feb 16, 2017 by ghost
no calls gives unusual file sets
#40 opened Aug 17, 2015 by keiranmraine
2
generateCavemanUMNormVCF - get sample names from BAM header enhancement
#35 opened Jul 14, 2015 by keiranmraine
ProTip! Exclude everything labeled bug with -label:bug.