Skip to content

Pull requests: broadinstitute/viral-ngs

New pull request New
12 Open 761 Closed
12 Open 761 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

update instance type to v2 for consolidate_run_tarballs
#1010 opened Nov 3, 2020 by tomkinsc Loading…
do not discard read IDs for single-end reads after running mvicuna
#1008 opened Mar 28, 2020 by tomkinsc Loading…
More robust determination of GATK version
#1004 opened Feb 8, 2020 by notestaff Loading…
@notestaff
expose read_utils.py::fastq_to_bam in wdl task and workflow
#1002 opened Feb 6, 2020 by tomkinsc Loading…
add code to illumina.py::RunInfo() to infer instrument model
#1000 opened Dec 3, 2019 by tomkinsc Loading…
1
add krakenuniq summary kmer filter
#998 opened Dec 3, 2019 by tomkinsc Loading…
8
pytest 4.2.0 -> 5.2.0
#989 opened Oct 3, 2019 by tomkinsc Loading…
add clumpify-based dedup
#970 opened Jul 2, 2019 by tomkinsc Loading…
31
Kraken2 depletion for human reads as alternative to bmtagger
#938 opened Mar 8, 2019 by yesimon Loading…
2
open_or_gzopen -> compressed_open. Add support for zstd.
#937 opened Mar 8, 2019 by yesimon Loading…
4
Split out TaxonomyDB into a separate python lib
#935 opened Mar 5, 2019 by yesimon Loading…
1
testing-related fixes
#913 opened Jan 20, 2019 by notestaff Loading…
@notestaff
ProTip! Follow long discussions with comments:>50.