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15 Open 33 Closed
15 Open 33 Closed
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Issues list

Something buggy in 0.preprocess-sites/0.prefilter-features.py
#97 opened Jul 12, 2024 by ErinWeisbart
Data split error in summarize-cells
#96 opened Jun 25, 2024 by ErinWeisbart
QC plots: DAPI correlation in Nuclei
#95 opened Mar 29, 2024 by ErinWeisbart
Pandas-2-ize the recipe
#94 opened Oct 8, 2023 by bethac07
Add optional extra barcode preprocessing
#93 opened Oct 6, 2023 by ErinWeisbart
1
Change Skip Site/Overwrite Behavior in 0.preprocess-sites
#88 opened Nov 2, 2021 by ErinWeisbart
Make folders only when necessary
#81 opened Oct 22, 2021 by ErinWeisbart
Hardcoding Cells and Nuclei for threshold QC
#76 opened Jun 15, 2021 by gwaybio
Error in 4.image-and-segmentation-qc.py bug Something isn't working
#73 opened Jun 7, 2021 by gwaybio
@ErinWeisbart
2
Aggregate fails when output_single_file_only option set to False Method Development These issues discuss method-based improvements and testing
#69 opened May 29, 2021 by gwaybio
1
Single cell normalization enhancement option enhancement New feature or request Method Development These issues discuss method-based improvements and testing
#57 opened Nov 23, 2020 by gwaybio
1
Include summary step for guide + guide abundances (cell count per perturbation) enhancement New feature or request
#56 opened Oct 23, 2020 by gwaybio Version 0.2 Release
12
Add command line option to reprocess files without overwriting existing data enhancement New feature or request
#36 opened Jul 28, 2020 by gwaybio
Write a combine batches module enhancement New feature or request
#20 opened Jun 11, 2020 by ErinWeisbart Version 0.2 Release
Normalize Single Cells by Site Method Development These issues discuss method-based improvements and testing question Further information is requested
#15 opened May 28, 2020 by gwaybio
1
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