submit files for callability analysis

CallabilityAnalysis/Callability_Analysis_update.inputs.json

@@ -0,0 +1 @@
+{"Callability_Analysis.ref_bwt":"${workspace.referenceData_hg38_ref_bwt}","Callability_Analysis.summarize_coverage.disk_size":"${16}","Callability_Analysis.ref_dict":"${workspace.referenceData_hg38_ref_dict}","Callability_Analysis.GenerateAnnotation.maxRetries":"${}","Callability_Analysis.exome_bed":"gs://gptag/AnnotateBed/bed_for_all_exon.hg38.bed","Callability_Analysis.chrX_name":"chrX","Callability_Analysis.sample_fraction":"${80}","Callability_Analysis.min_mapping_quality":"${20}","Callability_Analysis.interval_list":"gs://fc-8123e6b7-c245-489c-9a28-5ebbd128458d/redo_analysis/16bp_padded_nurture_CDS.hg38.interval_list","Callability_Analysis.ref_amb":"${workspace.referenceData_hg38_ref_amb}","Callability_Analysis.coverage_mem_gb":"${64}","Callability_Analysis.ref_index":"${workspace.referenceData_hg38_ref_fasta_index}","Callability_Analysis.gene_list":"${}","Callability_Analysis.GenerateAnnotation.diskGB":"${}","Callability_Analysis.chrY_name":"chrY","Callability_Analysis.ref_sa":"${workspace.referenceData_hg38_ref_sa}","Callability_Analysis.bam_or_cram_paths":"${this.samples.cram}","Callability_Analysis.ref_pac":"${workspace.referenceData_hg38_ref_pac}","Callability_Analysis.GenerateAnnotation.preemptible":"${}","Callability_Analysis.ref_ann":"${workspace.referenceData_hg38_ref_ann}","Callability_Analysis.generate_gene_summary":"${true}","Callability_Analysis.target_bed":"gs://fc-8123e6b7-c245-489c-9a28-5ebbd128458d/redo_analysis/16bp_padded_nurture_CDS.hg38.bed","Callability_Analysis.min_base_quality":"${20}","Callability_Analysis.output_prefix":"Nurture","Callability_Analysis.bai_or_crai_paths":"${this.samples.crai}","Callability_Analysis.sample_ids":"${this.samples.sample_id}","Callability_Analysis.ref_fasta":"${workspace.referenceData_hg38_ref_fasta}","Callability_Analysis.gene_bed":"gs://gptag/AnnotateBed/bed_for_all_gene.hg38.bed","Callability_Analysis.low_coverage_threshold":"${20}"}