fix relative path

broadinstitute · Nov 4, 2024 · 73d0ced · 73d0ced
1 parent dc893b6
commit 73d0ced
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/WholeGenomeGermlineSingleSample/pipelines/WholeGenomeGermlineSingleSample.wdl b/WholeGenomeGermlineSingleSample/pipelines/WholeGenomeGermlineSingleSample.wdl
@@ -33,7 +33,7 @@ import "../tasks/AggregatedBamQC.wdl" as AggregatedQC
 import "../tasks/Qc.wdl" as QC
 import "../tasks/BamToCram.wdl" as ToCram
 import "../tasks/Utilities.wdl" as Utilities
-import "../pipelines/VariantCalling.wdl" as ToGvcf
+import "./VariantCalling.wdl" as ToGvcf
 import "../structs/DNASeqStructs.wdl"
 
 # WORKFLOW DEFINITION

diff --git a/WholeGenomeGermlineSingleSample/tasks/SplitLargeReadGroup.wdl b/WholeGenomeGermlineSingleSample/tasks/SplitLargeReadGroup.wdl
@@ -15,10 +15,10 @@ version 1.0
 ## page at https://hub.docker.com/r/broadinstitute/genomes-in-the-cloud/ for detailed
 ## licensing information pertaining to the included programs.
 
-import "./tasks/Alignment.wdl" as Alignment
-import "./tasks/DragmapAlignment.wdl" as DragmapAlignment
-import "./tasks/BamProcessing.wdl" as Processing
-import "./tasks/Utilities.wdl" as Utils
+import "./Alignment.wdl" as Alignment
+import "./DragmapAlignment.wdl" as DragmapAlignment
+import "./BamProcessing.wdl" as Processing
+import "./Utilities.wdl" as Utils
 import "../structs/DNASeqStructs.wdl" as Structs
 
 workflow SplitLargeReadGroup {