0.4.2 update

broadinstitute · Jul 22, 2024 · 7322147 · 7322147
1 parent 604207e
commit 7322147
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/PECGS-QUICviz/QUICviz.wdl b/PECGS-QUICviz/QUICviz.wdl
@@ -5,7 +5,7 @@ workflow QUICviz {
         String sampleID
         Boolean isPECGS = true
         String tumorType
-        String quicvizDocker = "us-central1-docker.pkg.dev/tag-team-160914/gptag-dockers/cmi_quicviz:0.4.1"
+        String quicvizDocker = "us-central1-docker.pkg.dev/tag-team-160914/gptag-dockers/cmi_quicviz:0.4.2"
         File allelicCountsNormal
         File allelicCountsTumor
         File denoisedCopyRatiosNormal
@@ -79,9 +79,9 @@ task QUICviz {
             --tumor_seg_oncotated ~{oncotatedCalledTumor} \
             --output_dir outputs/
 
-        mv outputs/chromosome_plots.pdf outputs/~{sampleID}_chromosome_plots.pdf
-        mv outputs/gene_level_calls.csv outputs/~{sampleID}_gene_level_calls.csv
-        mv outputs/All_chr.png outputs/~{sampleID}_All_chr.png
+        mv outputs/*chromosome_plots.pdf outputs/~{sampleID}_chromosome_plots.pdf
+        mv outputs/*gene_level_calls.csv outputs/~{sampleID}_gene_level_calls.csv
+        mv outputs/*_all_chr.png outputs/~{sampleID}_All_chr.png
 
     >>>
     output {