fixed black formatting and failing test

biocommons · Sep 28, 2023 · 6144de7 · 6144de7
1 parent e781234
commit 6144de7
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/src/bioutils/sequences.py b/src/bioutils/sequences.py
@@ -231,8 +231,6 @@
 dna_to_aa1_vmito["TGA"] = "W"
 
 
-
-
 complement_transtable = bytes.maketrans(b"ACGT", b"TGCA")
 
 
@@ -518,7 +516,7 @@ class TranslationTable(StrEnum):
 
     standard = "standard"
     selenocysteine = "sec"
-    vertebrate_mitochondrial = 'vmito'
+    vertebrate_mitochondrial = "vmito"
 
 
 def translate_cds(seq, full_codons=True, ter_symbol="*", translation_table=TranslationTable.standard):

diff --git a/tests/test_sequences.py b/tests/test_sequences.py
@@ -43,10 +43,11 @@ def test_translate_selenoproteins():
     with pytest.raises(ValueError):
         translate_cds("AUGTGATA", translation_table=TranslationTable.selenocysteine)
 
+
 def test_translate_vertebrate_mitochondrial():
     """unit test for vertebrate mitochondrial codons"""
     assert translate_cds("AUGTGATAA") == "M**"
-    assert translate_cds("ATATGAAGGAGA", translation_table=TranslationTable.standard) == "MW**"
+    assert translate_cds("ATATGAAGGAGA", translation_table=TranslationTable.vertebrate_mitochondrial) == "MW**"
     assert (
         translate_cds(
             "ATAAG",