missed an import from Hmisc #72
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| name: R-CMD-CHECK | |
| # run on push, pull_request, and schedule 15 min, 2 hour, 6th day, any month, any day of the week | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'tornado.Rproj' | |
| - 'README.md' | |
| - 'etc/**' | |
| - 'pkgdown/**' | |
| - '.github/workflows/build_readme.yml' | |
| - '.github/workflows/pkgdown.yml' | |
| - '.github/workflows/r-cmd-check-no-suggests.yml' | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: 'devel'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'devel'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel'} | |
| #- {os: ubuntu-20.04, r: 'release'} | |
| #- {os: ubuntu-20.04, r: 'devel'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| wget http://security.ubuntu.com/ubuntu/pool/main/i/icu/libicu66_66.1-2ubuntu2.1_amd64.deb | |
| sudo dpkg -i libicu66_66.1-2ubuntu2.1_amd64.deb | |
| rm libicu66_66.1-2ubuntu2.1_amd64.deb | |
| sudo apt-get install libcurl4-openssl-dev libicu-dev texlive-latex-base | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Check Standard | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Test Coverage | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' | |
| run: covr::codecov() | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |