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Merge pull request #134 from berkeleybop/build
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Updates for Nov 8 2024 release
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caufieldjh authored Nov 8, 2024
2 parents 770b434 + f883a07 commit dde04b4
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4 changes: 2 additions & 2 deletions aio-base.json
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"val" : "Artificial Intelligence Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-11-07"
"val" : "2024-11-08"
} ],
"version" : "https://w3id.org/aio/releases/2024-11-07/aio-base.json"
"version" : "https://w3id.org/aio/releases/2024-11-08/aio-base.json"
},
"nodes" : [ {
"id" : "https://w3id.org/aio/AbstractRNNCell",
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4 changes: 2 additions & 2 deletions aio-base.obo
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format-version: 1.2
data-version: https://w3id.org/aio/releases/2024-11-07/aio-base.owl
data-version: https://w3id.org/aio/releases/2024-11-08/aio-base.owl
subsetdef: aio:ActivationFunctionSubset "Activation Function Subset"
subsetdef: aio:BiasSubset "Bias Subset"
subsetdef: aio:ClassSubset "Class Subset"
Expand All @@ -19,7 +19,7 @@ property_value: dc:type IAO:8000001
property_value: dcterms:description "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases." xsd:string
property_value: dcterms:license http://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Artificial Intelligence Ontology" xsd:string
property_value: owl:versionInfo "2024-11-07" xsd:string
property_value: owl:versionInfo "2024-11-08" xsd:string

[Term]
id: aio:AbstractRNNCell
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4 changes: 2 additions & 2 deletions aio-base.owl
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xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="https://w3id.org/aio/aio-base.owl">
<owl:versionIRI rdf:resource="https://w3id.org/aio/releases/2024-11-07/aio-base.owl"/>
<owl:versionIRI rdf:resource="https://w3id.org/aio/releases/2024-11-08/aio-base.owl"/>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<dcterms:description>This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.</dcterms:description>
<dcterms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<dcterms:title>Artificial Intelligence Ontology</dcterms:title>
<owl:versionInfo>2024-11-07</owl:versionInfo>
<owl:versionInfo>2024-11-08</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions aio-full.json
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Expand Up @@ -13,9 +13,9 @@
"val" : "Artificial Intelligence Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-11-07"
"val" : "2024-11-08"
} ],
"version" : "https://w3id.org/aio/releases/2024-11-07/aio-full.json"
"version" : "https://w3id.org/aio/releases/2024-11-08/aio-full.json"
},
"nodes" : [ {
"id" : "https://w3id.org/aio/AbstractRNNCell",
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6 changes: 3 additions & 3 deletions aio-full.obo
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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: https://w3id.org/aio/releases/2024-11-07/aio-full.owl
data-version: aio/releases/2024-11-08/aio-full.owl
subsetdef: aio:ActivationFunctionSubset "Activation Function Subset"
subsetdef: aio:BiasSubset "Bias Subset"
subsetdef: aio:ClassSubset "Class Subset"
Expand All @@ -13,11 +13,11 @@ subsetdef: aio:PreprocessingSubset "Preprocessing Subset"
idspace: aio https://w3id.org/aio/
idspace: dcterms http://purl.org/dc/terms/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
ontology: https://w3id.org/aio/aio-full.owl
ontology: aio/aio-full
property_value: dcterms:description "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases." xsd:string
property_value: dcterms:license http://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Artificial Intelligence Ontology" xsd:string
property_value: owl:versionInfo "2024-11-07" xsd:string
property_value: owl:versionInfo "2024-11-08" xsd:string

[Term]
id: aio:AbstractRNNCell
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10 changes: 5 additions & 5 deletions aio-full.owl
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@@ -1,6 +1,6 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="https://w3id.org/aio/aio-full.owl#"
xml:base="https://w3id.org/aio/aio-full.owl"
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/aio/aio-full.owl#"
xml:base="http://purl.obolibrary.org/obo/aio/aio-full.owl"
xmlns:BFO="http://purl.obolibrary.org/obo/BFO_"
xmlns:IAO="http://purl.obolibrary.org/obo/IAO_"
xmlns:aio="https://w3id.org/aio/"
Expand All @@ -12,12 +12,12 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="https://w3id.org/aio/aio-full.owl">
<owl:versionIRI rdf:resource="https://w3id.org/aio/releases/2024-11-07/aio-full.owl"/>
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/aio/aio-full.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/aio/releases/2024-11-08/aio-full.owl"/>
<dcterms:description>This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.</dcterms:description>
<dcterms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<dcterms:title>Artificial Intelligence Ontology</dcterms:title>
<owl:versionInfo>2024-11-07</owl:versionInfo>
<owl:versionInfo>2024-11-08</owl:versionInfo>
</owl:Ontology>


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75 changes: 75 additions & 0 deletions aio-to-cso.sssom_full.tsv
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# curie_map:
# cso: http://w3id.org/sssom/unknown_prefix/cso/
# oio: http://www.geneontology.org/formats/oboInOwl#
# owl: http://www.w3.org/2002/07/owl#
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
# rdfs: http://www.w3.org/2000/01/rdf-schema#
# semapv: https://w3id.org/semapv/vocab/
# skos: http://www.w3.org/2004/02/skos/core#
# sssom: https://w3id.org/sssom/
# license: https://w3id.org/sssom/license/unspecified
# mapping_set_id: https://w3id.org/sssom/mappings/93574721-5d20-4460-a95a-e51a4e9cd31a
subject_id subject_label predicate_id object_id object_label mapping_justification mapping_tool confidence subject_match_field object_match_field match_string
https://w3id.org/aio/ArtificialNeuralNetwork Artificial Neural Network skos:closeMatch cso:ann ann semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label ann
https://w3id.org/aio/ArtificialNeuralNetwork Artificial Neural Network skos:closeMatch cso:artificial_neural_network artificial neural network semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label artificial neural network
https://w3id.org/aio/BayesianNetwork Bayesian Network skos:closeMatch cso:bayesian_network bayesian network semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label bayesian network
https://w3id.org/aio/BinaryClassification Binary Classification skos:closeMatch cso:binary_classification binary classification semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label binary classification
https://w3id.org/aio/CausalGraphicalModel Causal Graphical Model skos:closeMatch cso:directed_acyclic_graph directed acyclic graph semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label directed acyclic graph
https://w3id.org/aio/Cleaning Cleaning skos:closeMatch cso:data_cleaning data cleaning semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label data cleaning
https://w3id.org/aio/Clustering Clustering skos:closeMatch cso:cluster_analysis cluster analysis semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label cluster analysis
https://w3id.org/aio/Clustering Clustering skos:closeMatch cso:clustering clustering semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label clustering
https://w3id.org/aio/ConceptDriftBias Concept Drift Bias skos:closeMatch cso:concept_drift concept drift semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label concept drift
https://w3id.org/aio/ContinualLearning Continual Learning skos:closeMatch cso:life-long_learning life-long learning semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label life-long learning
https://w3id.org/aio/DataAugmentation Data Augmentation skos:closeMatch cso:data_augmentation data augmentation semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label data augmentation
https://w3id.org/aio/DecisionTree Decision Tree skos:closeMatch cso:decision_tree decision tree semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label decision tree
https://w3id.org/aio/DeepConvolutionalNetwork Deep Convolutional Network skos:closeMatch cso:cnn cnn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label cnn
https://w3id.org/aio/DimensionalityReduction Dimensionality Reduction skos:closeMatch cso:dimensionality_reduction dimensionality reduction semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label dimensionality reduction
https://w3id.org/aio/EchoStateNetwork Echo State Network skos:closeMatch cso:echo_state_network echo state network semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label echo state network
https://w3id.org/aio/EnsembleLearning Ensemble Learning skos:closeMatch cso:ensemble_learning ensemble learning semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label ensemble learning
https://w3id.org/aio/EvolutionaryLLM Evolutionary LLM skos:closeMatch cso:evolutionary_algorithms evolutionary algorithms semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label evolutionary algorithms
https://w3id.org/aio/EvolutionaryLLM Evolutionary LLM skos:closeMatch cso:genetic_programming genetic programming semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label genetic programming
https://w3id.org/aio/ExplainableLLM Explainable LLM skos:closeMatch cso:interpretability interpretability semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label interpretability
https://w3id.org/aio/ExtremeLearningMachine Extreme Learning Machine skos:closeMatch cso:extreme_learning_machine extreme learning machine semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label extreme learning machine
https://w3id.org/aio/FeatureExtraction Feature Extraction skos:closeMatch cso:syntactic_information syntactic information semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label syntactic information
https://w3id.org/aio/FederatedLLM Federated LLM skos:closeMatch cso:privacy-preserving privacy-preserving semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label privacy-preserving
https://w3id.org/aio/GatedRecurrentUnit Gated Recurrent Unit skos:closeMatch cso:gated_recurrent_unit gated recurrent unit semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label gated recurrent unit
https://w3id.org/aio/GenerativeAdversarialNetwork Generative Adversarial Network skos:closeMatch cso:gan gan semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label gan
https://w3id.org/aio/HierarchicalClustering Hierarchical Clustering skos:closeMatch cso:hierarchical_clustering hierarchical clustering semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label hierarchical clustering
https://w3id.org/aio/KnearestNeighborAlgorithm K-nearest Neighbor Algorithm skos:closeMatch cso:k-nn k-nn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label k-nn
https://w3id.org/aio/KnearestNeighborAlgorithm K-nearest Neighbor Algorithm skos:closeMatch cso:knn knn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label knn
https://w3id.org/aio/KnearestNeighborClassificationAlgorithm K-nearest Neighbor Classification Algorithm skos:closeMatch cso:k-nn k-nn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label k-nn
https://w3id.org/aio/KnearestNeighborClassificationAlgorithm K-nearest Neighbor Classification Algorithm skos:closeMatch cso:knn knn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label knn
https://w3id.org/aio/KnearestNeighborRegressionAlgorithm K-nearest Neighbor Regression Algorithm skos:closeMatch cso:k-nn k-nn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label k-nn
https://w3id.org/aio/KnearestNeighborRegressionAlgorithm K-nearest Neighbor Regression Algorithm skos:closeMatch cso:knn knn semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label knn
https://w3id.org/aio/KnowledgeTransfer Knowledge Transfer skos:closeMatch cso:knowledge_transfer knowledge transfer semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label knowledge transfer
https://w3id.org/aio/KohonenNetwork Kohonen Network skos:closeMatch cso:self-organizing_feature_map self-organizing feature map semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label self-organizing feature map
https://w3id.org/aio/KohonenNetwork Kohonen Network skos:closeMatch cso:self-organizing_map self-organizing map semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label self-organizing map
https://w3id.org/aio/KohonenNetwork Kohonen Network skos:closeMatch cso:som som semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label som
https://w3id.org/aio/LanguageModel Language Model skos:closeMatch cso:language_model language model semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label language model
https://w3id.org/aio/LeastsquaresAnalysis Least-squares Analysis skos:closeMatch cso:least-squares_analysis least-squares analysis semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label least-squares analysis
https://w3id.org/aio/LogisticRegression Logistic Regression skos:closeMatch cso:logistic_regression logistic regression semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label logistic regression
https://w3id.org/aio/LongShortTermMemory Long Short Term Memory skos:closeMatch cso:lstm lstm semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label lstm
https://w3id.org/aio/ManifoldLearning Manifold Learning skos:closeMatch cso:manifold_learning manifold learning semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label manifold learning
https://w3id.org/aio/MarkovChain Markov Chain skos:closeMatch cso:markov_chain markov chain semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label markov chain
https://w3id.org/aio/MarkovChain Markov Chain skos:closeMatch cso:markov_process markov process semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label markov process
https://w3id.org/aio/ModelEfficiency Model Efficiency skos:closeMatch cso:computational_efficiency computational efficiency semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label computational efficiency
https://w3id.org/aio/MulticlassClassification Multiclass Classification skos:closeMatch cso:multiclass_classification multiclass classification semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label multiclass classification
https://w3id.org/aio/NaturalLanguageProcessing Natural Language Processing skos:closeMatch cso:natural_language_processing natural language processing semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label natural language processing
https://w3id.org/aio/NaturalLanguageProcessing Natural Language Processing skos:closeMatch cso:nlp nlp semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label nlp
https://w3id.org/aio/OutputLayer Output Layer skos:closeMatch cso:output_layer output layer semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label output layer
https://w3id.org/aio/Perceptron Perceptron skos:closeMatch cso:feed-forward_network feed-forward network semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label feed-forward network
https://w3id.org/aio/ProbabilisticGraphicalModel Probabilistic Graphical Model skos:closeMatch cso:graphical_model graphical model semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label graphical model
https://w3id.org/aio/ProportionalHazardsModel Proportional Hazards Model skos:closeMatch cso:proportional_hazards_model proportional hazards model semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label proportional hazards model
https://w3id.org/aio/RandomForest Random Forest skos:closeMatch cso:random_forest random forest semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label random forest
https://w3id.org/aio/ReasoningLLM Reasoning LLM skos:closeMatch cso:reasoning reasoning semapv:LexicalMatching oaklib 0.5 oio:hasRelatedSynonym rdfs:label reasoning
https://w3id.org/aio/RecurrentNeuralNetwork Recurrent Neural Network skos:closeMatch cso:recurrent_neural_network recurrent neural network semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label recurrent neural network
https://w3id.org/aio/RegressionAnalysis Regression Analysis skos:closeMatch cso:regression_analysis regression analysis semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label regression analysis
https://w3id.org/aio/RegressionAnalysis Regression Analysis skos:closeMatch cso:regression_analysis regression analysis semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label regression analysis
https://w3id.org/aio/RegressionAnalysis Regression Analysis skos:closeMatch cso:regression_model regression model semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label regression model
https://w3id.org/aio/ReinforcementLearning Reinforcement Learning skos:closeMatch cso:reinforcement_learning reinforcement learning semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label reinforcement learning
https://w3id.org/aio/SupervisedClustering Supervised Clustering skos:closeMatch cso:cluster_analysis cluster analysis semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label cluster analysis
https://w3id.org/aio/SupportVectorMachine Support Vector Machine skos:closeMatch cso:support_vector_machine support vector machine semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label support vector machine
https://w3id.org/aio/SupportVectorMachine Support Vector Machine skos:closeMatch cso:svm svm semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label svm
https://w3id.org/aio/UnsupervisedClustering Unsupervised Clustering skos:closeMatch cso:cluster_analysis cluster analysis semapv:LexicalMatching oaklib 0.5 oio:hasExactSynonym rdfs:label cluster analysis
https://w3id.org/aio/UnsupervisedLearning Unsupervised Learning skos:closeMatch cso:unsupervised_learning unsupervised learning semapv:LexicalMatching oaklib 0.5 rdfs:label rdfs:label unsupervised learning

4 changes: 2 additions & 2 deletions aio.json
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Expand Up @@ -13,9 +13,9 @@
"val" : "Artificial Intelligence Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-11-07"
"val" : "2024-11-08"
} ],
"version" : "https://w3id.org/aio/releases/2024-11-07/aio.json"
"version" : "https://w3id.org/aio/releases/2024-11-08/aio.json"
},
"nodes" : [ {
"id" : "https://w3id.org/aio/AbstractRNNCell",
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6 changes: 3 additions & 3 deletions aio.obo
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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: https://w3id.org/aio/releases/2024-11-07/aio.owl
data-version: releases/2024-11-08
subsetdef: aio:ActivationFunctionSubset "Activation Function Subset"
subsetdef: aio:BiasSubset "Bias Subset"
subsetdef: aio:ClassSubset "Class Subset"
Expand All @@ -13,11 +13,11 @@ subsetdef: aio:PreprocessingSubset "Preprocessing Subset"
idspace: aio https://w3id.org/aio/
idspace: dcterms http://purl.org/dc/terms/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
ontology: https://w3id.org/aio/aio.owl
ontology: aio
property_value: dcterms:description "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases." xsd:string
property_value: dcterms:license http://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Artificial Intelligence Ontology" xsd:string
property_value: owl:versionInfo "2024-11-07" xsd:string
property_value: owl:versionInfo "2024-11-08" xsd:string

[Term]
id: aio:AbstractRNNCell
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