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1. genotype-SPIM genotype-SPIM Public

   Spatial capture-recapture accouting for genotyping error

   R 4 1

2. Jolly-Seber Jolly-Seber Public

   Jolly Seber MCMC samplers in nimble, computationally efficient, Poisson recruitment process.

   R 5

3. Spatial-Mark-Resight Spatial-Mark-Resight Public

   Various spatial mark resight MCMC samplers allowing for all sample types including "unknown marked status"

   R 3

4. 2-flank-SPIM 2-flank-SPIM Public

   2-flank SPIM from Augustine et al. (2018) implemented in Nimble.

   R

5. eDNA-Latent-Copies eDNA-Latent-Copies Public

   Models for an eDNA release experiment that treat copy number as latent count variables

   R

6. RoyleYoung RoyleYoung Public

   Royle Young models for area or transect searches where you detect individuals (not their sign). Density and resource selection. Data simulators and files to fit models in nimble. Known ID versions …

   R