Merge pull request #1 from axiom-data-science/cleaning

Cleaning

.github/dependabot.yml

@@ -0,0 +1,7 @@
+version: 2
+updates:
+  - package-ecosystem: 'github-actions'
+    directory: '/'
+    schedule:
+      # Check for updates once a week
+      interval: 'weekly'

.github/workflows/release.yaml

@@ -0,0 +1,24 @@
+
+---
+name: Release
+
+on: [push]
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+      - name: Install dependencies
+        run: |
+          python -m pip install -U pip wheel "setuptools<66.0.0" setuptools-scm twine
+      - name: Build distributions
+        run: python setup.py sdist bdist_wheel
+
+      - name: Publish to PyPI
+        if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          user: ${{ secrets.PYPI_USERNAME }}
+          password: ${{ secrets.PYPI_PASSWORD }}

.pre-commit-config.yaml

@@ -0,0 +1,62 @@
+repos:
+
+- repo: https://github.com/econchick/interrogate
+  rev: 1.5.0
+  hooks:
+    - id: interrogate
+      exclude: ^(docs|setup.py|tests)
+      args: [--config=pyproject.toml]
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.1.0
+  hooks:
+    - id: trailing-whitespace
+      exclude: tests/data
+    - id: check-ast
+    - id: debug-statements
+    - id: end-of-file-fixer
+    - id: check-docstring-first
+    - id: check-added-large-files
+    - id: requirements-txt-fixer
+    - id: file-contents-sorter
+      files: requirements-dev.txt
+
+- repo: https://github.com/pycqa/flake8
+  rev: 3.9.2
+  hooks:
+    - id: flake8
+      exclude: docs/conf.py
+      args: [--max-line-length=105]#, --ignore=E203,E501,W503, --select=select=C,E,F,W,B,B950]
+
+- repo: https://github.com/pre-commit/mirrors-isort
+  rev: v5.10.1
+  hooks:
+  - id: isort
+    additional_dependencies: [toml]
+    args: [--project=gcm_filters, --multi-line=3, --lines-after-imports=2, --lines-between-types=1, --trailing-comma, --force-grid-wrap=0, --use-parentheses, --line-width=88]
+
+# - repo: https://github.com/asottile/seed-isort-config
+#   rev: v2.1.1
+#   hooks:
+#     - id: seed-isort-config
+
+- repo: https://github.com/psf/black
+  rev: 22.3.0
+  hooks:
+  - id: black
+    language_version: python3
+
+- repo: https://github.com/pre-commit/mirrors-mypy
+  rev: v0.982
+  hooks:
+  - id: mypy
+    additional_dependencies: [types-requests, types-setuptools]
+    exclude: docs/source/conf.py
+    args: [--ignore-missing-imports]
+
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.1.0
+  hooks:
+    - id: codespell
+      args:
+        - --quiet-level=2

LICENSE.txt

@@ -7,4 +7,3 @@ Permission is hereby granted, free of charge, to any person obtaining a copy of
 The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
 
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-

README.md

@@ -26,7 +26,7 @@ Clone from github (HTTPS or SSH)
 
 Install environment file
 
-    >>> conda env create -f environment.yml 
+    >>> conda env create -f environment.yml
 
 Activate new environment
 
@@ -39,6 +39,8 @@ Install package locally in package directory
 
 # Example Usage
 
+If you input to `intake.open_coops_cat()` the keyword argument `process_adcp=True`, the ADCP Dataset will contain velocity on u and v components, along- and across-channel components, and along- and across-channel subtidal signal (processed with pl33 tidal filter, also included).
+
 ```
 import intake
 
@@ -51,6 +53,19 @@ print(list(cat))
 # look at a source
 print(cat["COI0302"])
 
-# read in data to a Datset
+# read in data to a Dataset
 ds = cat["COI0302"].read()
 ```
+
+
+### Development
+
+To also develop this package, install additional packages with:
+``` bash
+$ conda install --file requirements-dev.txt
+```
+
+To then check code before committing and pushing it to github, locally run
+``` bash
+$ pre-commit run --all-files
+```

environment.yml

@@ -4,19 +4,13 @@ channels:
 dependencies:
   # Required for full project functionality (dont remove)
   - pytest
-  # Examples (remove and add as needed)
-  # - jupyter
-  # - jupyterlab
+  - cf_pandas
   - intake
   - ipython
-  - xarray
+  # - noaa_coops
   - numpy
-  # - scipy
-  # - dask
-  # - netcdf4
   - pandas
-  # - matplotlib
   - pip
+  - xarray
   - pip:
-    - git+https://github.com/kthyng/noaa_coops@warning
-
+    - noaa_coops

intake_coops/__init__.py

@@ -15,6 +15,7 @@
 
 from importlib.metadata import PackageNotFoundError, version
 
+
 try:
     __version__ = version("intake-coops")
 except PackageNotFoundError: