Merge pull request #1 from jhnnsrs/with_next

Added modular system

src/index.css

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+@tailwind base;
+@tailwind components;
+@tailwind utilities;
+
+@layer base {
+  :root {
+    --background: 0 0% 100%;
+    --foreground: 240 10% 3.9%;
+
+    --card: 0 0% 100%;
+    --card-foreground: 240 10% 3.9%;
+
+    --popover: 0 0% 100%;
+    --popover-foreground: 240 10% 3.9%;
+
+    --primary: 240 5.9% 10%;
+    --primary-foreground: 0 0% 98%;
+
+    --secondary: 240 4.8% 95.9%;
+    --secondary-foreground: 240 5.9% 10%;
+
+    --muted: 240 4.8% 95.9%;
+    --muted-foreground: 240 3.8% 46.1%;
+
+    --accent: 240 4.8% 95.9%;
+    --accent-foreground: 240 5.9% 10%;
+
+    --destructive: 0 84.2% 60.2%;
+    --destructive-foreground: 0 0% 98%;
+
+    --border: 240 5.9% 90%;
+    --input: 240 5.9% 90%;
+    --ring: 240 10% 3.9%;
+
+    --radius: 0.5rem;
+  }
+
+  .dark {
+    --background: 240 10% 3.9%;
+    --foreground: 0 0% 98%;
+
+    --card: 240 10% 3.9%;
+    --card-foreground: 0 0% 98%;
+
+    --popover: 240 10% 3.9%;
+    --popover-foreground: 0 0% 98%;
+
+    --primary: 0 0% 98%;
+    --primary-foreground: 240 5.9% 10%;
+
+    --secondary: 240 3.7% 15.9%;
+    --secondary-foreground: 0 0% 98%;
+
+    --muted: 240 3.7% 15.9%;
+    --muted-foreground: 240 5% 64.9%;
+
+    --accent: 240 3.7% 15.9%;
+    --accent-foreground: 0 0% 98%;
+
+    --destructive: 0 62.8% 30.6%;
+    --destructive-foreground: 0 0% 98%;
+
+    --border: 240 3.7% 15.9%;
+    --input: 240 3.7% 15.9%;
+    --ring: 240 4.9% 83.9%;
+  }
+}
+
+@layer base {
+  * {
+    @apply border-border;
+  }
+  body {
+    @apply bg-background text-foreground;
+  }
+}

components.json

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+{
+  "$schema": "https://ui.shadcn.com/schema.json",
+  "style": "default",
+  "rsc": false,
+  "tsx": true,
+  "tailwind": {
+    "config": "tailwind.config.js",
+    "css": " src/index.css",
+    "baseColor": "zinc",
+    "cssVariables": true
+  },
+  "aliases": {
+    "components": "src/universal/components",
+    "utils": "src/lib/utils"
+  }
+}

graphql/mikro_next/fragments/antibody.graphql

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+fragment Antibody on Antibody {
+    name
+    epitope
+}

graphql/mikro_next/fragments/camera.graphql

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+fragment Camera on Camera {
+    sensorSizeX
+    sensorSizeY
+    pixelSizeX
+    pixelSizeY
+
+    name
+    serialNumber
+
+}

graphql/mikro_next/fragments/channel.graphql

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+fragment Channel on Channel {
+    id
+    name
+    excitationWavelength
+}

graphql/mikro_next/fragments/credentials.graphql

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+fragment Credentials on Credentials {
+  accessKey
+  status
+  secretKey
+  bucket
+  key
+  sessionToken
+  store
+}
+
+fragment AccessCredentials on AccessCredentials {
+  accessKey
+  secretKey
+  bucket
+  key
+  sessionToken
+  path
+}

graphql/mikro_next/fragments/dataset.graphql

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+fragment Dataset on Dataset {
+  id
+  name
+  description
+  history {
+    ...History
+  }
+  images {
+    ...ListImage
+  }
+  files {
+    ...ListFile
+  }
+  children {
+    ...ListDataset
+  }
+  isDefault
+  pinned
+  createdAt
+  creator {
+    sub
+  }
+  tags
+}
+
+fragment ListDataset on Dataset {
+  id
+  name
+  description
+  isDefault
+}

graphql/mikro_next/fragments/era.graphql

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+fragment Era on Era {
+    id
+    begin
+    name
+}

graphql/mikro_next/fragments/file.graphql

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+fragment File on File {
+  origins {
+    id
+  }
+  id
+  name
+  store {
+    ...BigFileStore
+  }
+}
+
+fragment ListFile on File {
+  id
+  name
+}

graphql/mikro_next/fragments/fluorophore.graphql

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+fragment Fluorophore on Fluorophore {
+    name
+    emissionWavelength
+    excitationWavelength
+}

graphql/mikro_next/fragments/history.graphql

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+fragment History on History {
+  id
+  during
+  kind
+  date
+}

graphql/mikro_next/fragments/image.graphql

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+fragment Image on Image {
+  origins {
+    id
+  }
+  id
+  name
+  store {
+    ...ZarrStore
+  }
+  views {
+    ...ChannelView
+    ...TransformationView
+    ...LabelView
+    ...TimepointView
+    ...OpticsView
+  }
+  pinned
+  renders {
+    ...Snapshot
+    ...Video
+  }
+  dataset {
+    name
+    id
+  }
+  createdAt
+  history(pagination: { limit: 3 }) {
+    ...History
+  }
+  creator {
+    sub
+  }
+  tags
+  metrics {
+    ...ImageMetric
+  }
+  roiOrigins {
+    ...ListROI
+  }
+  fileOrigins {
+    ...ListFile
+  }
+}
+
+fragment ListImage on Image {
+  latestSnapshot {
+    id
+    store {
+      key
+      presignedUrl
+    }
+  }
+  id
+  name
+}

graphql/mikro_next/fragments/instrument.graphql

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+fragment Instrument on Instrument {
+    model
+    name
+    serialNumber
+
+}

graphql/mikro_next/fragments/metric.graphql

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+fragment ImageIntMetric on ImageIntMetric {
+  id
+  value
+}
+
+fragment ImageMetric on ImageMetric {
+  ...ImageIntMetric
+}

graphql/mikro_next/fragments/objective.graphql

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+fragment Objective on Objective {
+    na
+    name
+    serialNumber
+
+}

graphql/mikro_next/fragments/roi.graphql

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+fragment ListROI on ROI {
+  id
+  image {
+    id
+    name
+  }
+}

graphql/mikro_next/fragments/snapshot.graphql

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+fragment Snapshot on Snapshot {
+    id
+   store {
+        key
+        presignedUrl
+   }
+}

graphql/mikro_next/fragments/stage.graphql

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+fragment Stage on Stage {
+  id
+  views {
+    ...TransformationView
+  }
+  pinned
+  name
+}
+
+fragment ListStage on Stage {
+  id
+  name
+}

graphql/mikro_next/fragments/store.graphql

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+fragment ZarrStore on ZarrStore {
+  id
+  key
+  bucket
+  path
+  shape
+  dtype
+}
+
+fragment ParquetStore on ParquetStore {
+  id
+  key
+  bucket
+  path
+}
+
+fragment BigFileStore on BigFileStore {
+  id
+  key
+  bucket
+  path
+}

graphql/mikro_next/fragments/table.graphql

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+fragment Table on Table {
+  origins {
+    id
+  }
+  id
+  name
+  store {
+    ...ParquetStore
+  }
+}

graphql/mikro_next/fragments/video.graphql

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+fragment Video on Video {
+  id
+  store {
+    key
+    presignedUrl
+  }
+}