entitites

graphql/mikro-next/fragments/entity.graphql

@@ -0,0 +1,16 @@
+fragment Entity on Entity {
+  id
+  name
+  kind {
+    id
+    label
+    ontology {
+      id
+      name
+    }
+  }
+  group {
+    id
+    name
+  }
+}

graphql/mikro-next/fragments/entity_kind.graphql

@@ -0,0 +1,8 @@
+fragment EntityKind on EntityKind {
+  id
+  label
+  ontology {
+    id
+    name
+  }
+}

graphql/mikro-next/fragments/experiment.graphql

@@ -0,0 +1,5 @@
+fragment Experiment on Experiment {
+  id
+  name
+  description
+}

graphql/mikro-next/fragments/image.graphql

@@ -16,6 +16,7 @@ fragment Image on Image {
     ...AcquisitionView
     ...RGBView
     ...WellPositionView
+    ...SpecimenView
   }
   pinned
   renders {

graphql/mikro-next/fragments/ontology.graphql

@@ -0,0 +1,4 @@
+fragment Ontology on Ontology {
+  id
+  name
+}

graphql/mikro-next/fragments/protocol.graphql

@@ -0,0 +1,9 @@
+fragment Protocol on Protocol {
+  id
+  name
+  experiment {
+    id
+    name
+    description
+  }
+}

graphql/mikro-next/fragments/roi.graphql

@@ -4,5 +4,19 @@ fragment ListROI on ROI {
     id
     name
   }
+  entity {
+    id
+    name
+    kind {
+      label
+    }
+    parent {
+      id
+      name
+      kind {
+        label
+      }
+    }
+  }
   vectors
 }

graphql/mikro-next/fragments/specimen.graphql

@@ -0,0 +1,17 @@
+fragment Specimen on Specimen {
+  id
+  entity {
+    id
+    kind {
+      id
+      label
+    }
+    name
+    group {
+      id
+    }
+  }
+  protocol {
+    id
+  }
+}

graphql/mikro-next/fragments/views.graphql

@@ -87,13 +87,21 @@ fragment LabelView on LabelView {
   ...View
   id
   fluorophore {
-    ...Fluorophore
+    ...Entity
   }
   primaryAntibody {
-    ...Antibody
+    ...Entity
   }
   secondaryAntibody {
-    ...Antibody
+    ...Entity
+  }
+}
+
+fragment SpecimenView on SpecimenView {
+  ...View
+  id
+  specimen {
+    ...Specimen
   }
 }
 

graphql/mikro-next/queries/entity.graphql

@@ -0,0 +1,15 @@
+query GetEntity($id: ID!) {
+  entity(id: $id) {
+    ...Entity
+  }
+}
+
+query SearchEntities($search: String, $values: [ID!]) {
+  options: entities(
+    filters: { search: $search, ids: $values }
+    pagination: { limit: 10 }
+  ) {
+    value: id
+    label: name
+  }
+}

graphql/mikro-next/queries/entity_kind.graphql

@@ -0,0 +1,15 @@
+query GetEntityKind($id: ID!) {
+  entityKind(id: $id) {
+    ...EntityKind
+  }
+}
+
+query SearchEntityKind($search: String, $values: [ID!]) {
+  options: entityKinds(
+    filters: { search: $search, ids: $values }
+    pagination: { limit: 10 }
+  ) {
+    value: id
+    label: label
+  }
+}

graphql/mikro-next/queries/ontology.graphql

@@ -0,0 +1,15 @@
+query GetOntology($id: ID!) {
+  ontology(id: $id) {
+    ...Ontology
+  }
+}
+
+query SearchOntologies($search: String, $values: [ID!]) {
+  options: ontologies(
+    filters: { search: $search, ids: $values }
+    pagination: { limit: 10 }
+  ) {
+    value: id
+    label: name
+  }
+}