v0.13.0

• Allow download of a remote custom taxdump via the taxdump_url parameter of the TaxDb class.
• Allow fuzzy string matching in taxid_from_name through the fuzzy parameter. The degree of similarity between the query and the matches can be controlled using the score_cutoff parameter.

v0.12.0

• Add the rank_lineage, ranked_name_lineage, and ranked_taxid_lineage attributes to Taxon.

v0.11.0

• Allow taxid_from_name to take a list of names as input.

v0.10.3

• Strip whitespace when parsing string fields in nodes.dmp and names.dmp. By @Midnighter (#13).

v0.10.2

• Add an __hash__ dunder method to Taxon to make it hashable. By @maxibor (#11).

v0.10.1

• Add a __eq__ dunder method to Taxon.

v0.10.0

• Migrated from setup.py to flit.
• Class attributes are now exposed using getters (via the @property decorator).
• Added a __str__ dunder method to the Taxon class.
• Modified Taxon's __repr__ dunder method to make it display a string that resembles GTDB's lineage strings:

taxon = taxopy.Taxon(9673, taxdb)
repr(taxon)

r__Riboviria;k__Orthornavirae;p__Lenarviricota;c__Leviviricetes;o__Timlovirales

• Added a parent method to the Taxon class:

taxon = taxopy.Taxon(9673, taxdb)
parent_taxon = taxon.parent(taxdb)
print(taxon)
print(parent_taxon)

r__Riboviria;k__Orthornavirae;p__Lenarviricota;c__Leviviricetes;o__Timlovirales
r__Riboviria;k__Orthornavirae;p__Lenarviricota;c__Leviviricetes

v0.9.2

• Fixes a bug where the taxdb.oldtaxid2newtaxid dictionary was being accessed to create a legacy_taxid even when a merged.dmp file was not supplied.

v0.9.1

• Fixes a bug where taxopy tried to read the _merged_dmp and oldtaxid2newtaxid attributes from the TaxDb class itself rather than an instance.

v0.9.0

• Add support to merged.dmp and legacy taxids.