install dir 2 #41
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| name: deploy-conda | |
| on: | |
| push: | |
| branches: | |
| - main | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| build_conda: | |
| runs-on: ubuntu-latest | |
| name: Publish to Conda | |
| strategy: | |
| fail-fast: false | |
| # To upload to PyPI on every tag starting with 'v', use the following: | |
| # if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') | |
| # To publish to pypi on each GitHub Release, use the following: | |
| # if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| auto-update-conda: true | |
| - name: Build and upload package | |
| shell: bash -el {0} | |
| run: | | |
| # conda update -y -n base conda | |
| # conda install -y -n base conda-libmamba-solver | |
| # conda config --set solver libmamba | |
| conda install -y conda-build anaconda-client | |
| conda config --set anaconda_upload yes | |
| export PATH=$(conda info --root):$PATH | |
| export PATH=$(conda info --root)/bin:$PATH | |
| conda-build --output-folder . . -c conda-forge | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
| test_conda: | |
| needs: [build_conda] | |
| name: Test on ${{ matrix.os }} and Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| # python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| exclude: | |
| - os: windows-latest | |
| python-version: '3.7' # python 3.7 on windows gives HD5 lib error | |
| steps: | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: myenv | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # Move source to avoid import from local folder | |
| - name: Rename source | |
| run: | | |
| mv restoreio restoreio-DoNotImport | |
| rm setup.cfg | |
| # This is to prevent the error "libomp is already initialized", | |
| # which occurs only in MacOS. To circumvent the error, the | |
| # following script will remove libomp.dylib from imate package, and | |
| # copies libomp.dylib from restoreio to imate package. | |
| # - name: Test (MacOS) | |
| # if: matrix.os == 'macos-latest' | |
| # run: | | |
| # export PATH=$(conda info --root):$PATH | |
| # export PATH=$(conda info --root)/bin:$PATH | |
| # conda install -c s-ameli restoreio -y | |
| # conda install pytest -y | |
| # chmod +x scripts/fix_libomp.sh | |
| # ./scripts/fix_libomp.sh "$(conda info --root)/bin/python" | |
| # pytest | |
| # shell: bash | |
| # - name: Test (Linux, Windows) | |
| # if: matrix.os != 'macos-latest' | |
| - name: Test | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge -c s-ameli restoreio -y | |
| conda install pytest -y | |
| pytest |