Package #98
Workflow file for this run
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| name: Package | |
| on: | |
| push: | |
| tags: | |
| - v*.*.* | |
| jobs: | |
| wheel-linux-aarch64: | |
| name: Build Linux wheels (Aarch64) | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-manylinux_aarch64 | |
| - cp37-manylinux_aarch64 | |
| - cp38-manylinux_aarch64 | |
| - cp39-manylinux_aarch64 | |
| - cp310-manylinux_aarch64 | |
| - cp311-manylinux_aarch64 | |
| - cp312-manylinux_aarch64 | |
| - pp37-manylinux_aarch64 | |
| - pp38-manylinux_aarch64 | |
| - pp39-manylinux_aarch64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Set up QEMU | |
| id: qemu | |
| uses: docker/setup-qemu-action@v2 | |
| with: | |
| platforms: all | |
| - name: Build manylinux wheels | |
| uses: pypa/cibuildwheel@v2.16.2 | |
| env: | |
| CIBW_ARCHS: aarch64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-linux-x86_64: | |
| name: Build Linux wheels (x86-64) | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-manylinux_x86_64 | |
| - cp37-manylinux_x86_64 | |
| - cp38-manylinux_x86_64 | |
| - cp39-manylinux_x86_64 | |
| - cp310-manylinux_x86_64 | |
| - cp311-manylinux_x86_64 | |
| - cp312-manylinux_x86_64 | |
| - pp37-manylinux_x86_64 | |
| - pp38-manylinux_x86_64 | |
| - pp39-manylinux_x86_64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Build manylinux wheels | |
| uses: pypa/cibuildwheel@v2.16.2 | |
| env: | |
| CIBW_ARCHS: x86_64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-macos-x86_64: | |
| name: Build MacOS wheels (x86-64) | |
| runs-on: macOS-11 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-macosx_x86_64 | |
| - cp37-macosx_x86_64 | |
| - cp38-macosx_x86_64 | |
| - cp39-macosx_x86_64 | |
| - cp310-macosx_x86_64 | |
| - cp311-macosx_x86_64 | |
| - cp312-macosx_x86_64 | |
| - pp37-macosx_x86_64 | |
| - pp38-macosx_x86_64 | |
| - pp39-macosx_x86_64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Build manylinux wheels | |
| uses: pypa/cibuildwheel@v2.16.2 | |
| env: | |
| CIBW_ARCHS: x86_64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-macos-aarch64: | |
| name: Build MacOS wheels (Aarch64) | |
| runs-on: macOS-11 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp38-macosx_arm64 | |
| - cp39-macosx_arm64 | |
| - cp310-macosx_arm64 | |
| - cp311-macosx_arm64 | |
| - cp312-macosx_arm64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| target: aarch64-apple-darwin | |
| - name: Build manylinux wheels | |
| uses: pypa/cibuildwheel@v2.16.2 | |
| env: | |
| CIBW_ARCHS: arm64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| sdist: | |
| runs-on: ubuntu-latest | |
| name: Build source distribution | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| - name: Install build requirements | |
| run: python -m pip install -r .github/workflows/requirements.txt | |
| - name: Build wheel distribution | |
| run: python setup.py sdist | |
| - name: Store built wheels | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| test-sdist: | |
| runs-on: ubuntu-latest | |
| name: Test source distribution | |
| needs: | |
| - sdist | |
| steps: | |
| - name: Setup Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| - name: Download built wheels | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist/ | |
| - name: Update pip to latest version | |
| run: python -m pip install -U pip setuptools wheel | |
| - name: Install built wheel | |
| run: python -m pip install --no-binary pyhmmer --find-links=dist pyhmmer | |
| - name: Run tests without coverage | |
| run: python -m unittest pyhmmer.tests -vv | |
| upload: | |
| environment: PyPI | |
| runs-on: ubuntu-latest | |
| name: Upload | |
| needs: | |
| - sdist | |
| - test-sdist | |
| - wheel-linux-aarch64 | |
| - wheel-linux-x86_64 | |
| - wheel-macos-x86_64 | |
| - wheel-macos-aarch64 | |
| steps: | |
| - name: Download built distributions | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist | |
| - name: Publish distributions to PyPI | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| skip_existing: false | |
| release: | |
| environment: GitHub Releases | |
| runs-on: ubuntu-latest | |
| if: "startsWith(github.ref, 'refs/tags/v')" | |
| name: Release | |
| needs: upload | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v1 | |
| - name: Release a Changelog | |
| uses: rasmus-saks/release-a-changelog-action@v1.0.1 | |
| with: | |
| github-token: '${{ secrets.GITHUB_TOKEN }}' | |
| aur: | |
| environment: Arch Linux User Repository | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.ref, 'rc')" | |
| name: Update AUR package | |
| needs: | |
| - sdist | |
| - upload | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Download built wheels | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist | |
| - name: Extract package version | |
| run: "echo PKGVER=$(python setup.py --version) >> $GITHUB_ENV" | |
| - name: Compute SHA256 of source distribution | |
| run: "echo SHA256=$(sha256sum dist/pyhmmer-${{ env.PKGVER }}.tar.gz | cut -f1 -d' ') >> $GITHUB_ENV" | |
| - name: Generate PKGBUILD | |
| run: 'sed -e "s/%pkgver/${{ env.PKGVER }}/g" -e "s/%sha256sum/${{ env.SHA256 }}/g" pkg/aur/PKGBUILD.in > pkg/aur/PKGBUILD' | |
| - name: Update package | |
| uses: KSXGitHub/github-actions-deploy-aur@v2.2.5 | |
| with: | |
| pkgname: python-pyhmmer | |
| pkgbuild: pkg/aur/PKGBUILD | |
| commit_username: ${{ secrets.AUR_USER }} | |
| commit_email: ${{ secrets.AUR_EMAIL }} | |
| ssh_private_key: ${{ secrets.AUR_SSH_PRIVATE_KEY }} | |
| commit_message: ${{ github.event.head_commit.message }} | |
| ssh_keyscan_types: rsa,dsa,ecdsa,ed25519 |