PySEP v0.3.0 #78
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PySEP v0.3.0 #78
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* renamed specfem station writing function, and added an ordering component * bumping version in setup and changing url and author * small mt typo change * added an example config that gathers a small amount of data for testing/dev purposes * added a new kwarg 'order_stations_list_by' which sets the order of the output stations list, related to #36 * bugfix typo parameter call * bugfix rotating was not actually rotating streams in place for arbitrary components ->ENZ * bugfix fixed rotation testing, which was not actually evaluating as expected. some confusion about editing streams and inventories in place which was not actually happening. Fixed and now rotate test works as expected * added 12Z test data for rotating 12Z -> ENZ which works now, added test to cover this case * moved 2012 central alaska IU gather script (which gathers 12Z component) into examples * bugfix pysep was not setting log level properly from the config file. now in the load() function, config log level is allowed to override logger level * changed config examples dir name to test, to be used as a test bed for checking specific data gathering features such as data gap removal * bugfix #57, reading event origin time from sac header was shifting times unexpectedly
* bugfix clipped amplitude check was not properly checking the data array * added error catch and release during rotate code to avoid processing breakdown. also rotate now goes by channel rather than the entire stream at once * rearranged rotation algorithm to be a bit cleaner, previously too many different streams floating around and being fed to one another. * pysep rotation now has additional checks for station metadata and error catching to get around any rotation bugs that used to cause the rotation to fail added new tests to cover rotation and fixed a rotation test that was failing due to change added a config for testing the rotation bug, providing station info * updating bug config file
* fixed exclude string making and added a bool check for deleting tmpdir in mass download function * removed accidental debug statement
* moved llnl_db_client as a hard dep of pysep and moved it into an optional dependency hid llnl_db_client import statement behind a try-except block and threw a check in the init of pysep only requiring this dep if the client choice is LLNL * Added setup.py legacy file * removed llnl dep from conda env yml file * tested install with and without llnl dep and tested check statement for missing llnl import
* started adding declustering rewrite with test and test data * finished cartesian gridding decluster script, added radial gridding decluster script, added tests to cover both and plotting * decluster catalog added feature to threshold events by min magnitude and data availability separate from declustering added plot feture to connect source receiver pairs based on data availability added feature to allow sorting by data availability * adjusting default figure names for declust plotting scripts * cleaned up plotting functions into functions to avoid repeat plotting calls, added removed events to plotting routines * small typo updte declust * moved some declustering functions into util * declust started srcrcv weighting function * individual source or receiver list weighting working with the smart scan feature next up is to implement the entire weighting scheme with normalization and based on data availability * declust slow progression * finished srcrcv weighting scheme * finished declustering and weighting algos with additional plotting and text file writing for weights * added basic test for srcrcv weight calc
* reformatted PySEP init docstring, added missing parameters and categorized parameters to make things easier to find * removed hard requirement that user provides event depth and magnitude if event selection is default * added boolean flag to toggle insufficient length checker bugfix: added remove_clipped boolean toggle on the actual processing step, which was not there before * bugfix phase list passed from pysep into util function for phase getting * last minute touch ups on docstring * recsec removed unneeded myround function from top of script * categorized recsec init docstring for easier readability
…as an empty list, but it was expected as NoneType within the main processing function. removed this type conversion
ign dummy values to cap header because these are required by record section
* moved docstring of pysep into class description for autoapi * instantiated sphinx for doc creation and autoapi building, reorganized pysep and recsec docstrings to be well formatted for autoapi * migrated wiki docs into docs directory
bugfix: removing debug statement left in pysep
* replace plotw_rs with record section run command in pysep plotting, sets default sorting to 'distance' and not 'distance_r' for pysep-generated record section * working on ordering of multiple pages * added feature tmark to add static lines at given time values, does not address time shifts or move out
* reformatting plotw_rs page separation logic * sort order of multi-page record sections is now reversed to be more natural
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Declustclass for declustering and weighting Feature: event declustering and source receiver weighting #66