Update install procedure (#61)

* replaced old-school setup.py with new-school pyproject.toml file, removed ununsed environment.yaml file which may be replaced later when Conda install is attempted

* direct pip install will not work due to some dependency errors with cartopy and GEOS but .toml file still valid. added conda-required environment.yaml file which will be used to do the entire install procedure

environment.yml

@@ -1,7 +1,13 @@
 name: pysep
 channels:
-  - conda-forge
-  - defaults
+    - conda-forge
+    - defaults
 dependencies:
-  - obspy
-  - cartopy
+    - pip
+    - obspy
+    - cartopy
+    - pyyaml
+    - pip:
+      - git+https://github.com/krischer/llnl_db_client.git
+      - -e .
+

pyproject.toml

@@ -0,0 +1,34 @@
+[build-system]
+requires = ["setuptools>=61.0.0", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "pysep"
+version = "0.2.0"
+description = "Python Seismogram Extraction and Processing"
+readme = "README.md"
+requires-python = ">=3.7"
+license = {file = "LICENSE.txt"}
+authors = [
+    {name = "adjTomo Dev Team"},
+    {email = "adjtomo@gmail.com"}
+]
+dependencies = [
+    "obspy",
+    "cartopy",
+    "pyyaml",
+    "llnl_db_client @ git+https://github.com/krischer/llnl_db_client.git"
+]
+
+[project.optional-dependencies]
+test = ["pytest"]
+dev = ["pytest", "ipython", "ipdb"]
+
+[project.urls]
+homepage = "https://github.com/adjtomo/"
+documentation = "https://github.com/adjtomo/pysep/wiki"
+repository = "https://github.com/adjtomo/pysep"
+
+[project.scripts]
+pysep = "pysep.pysep:main"
+recsec = "pysep.recsec:main"

pysep/recsec.py

@@ -1887,7 +1887,7 @@ def parse_args():
     """
     parser = argparse.ArgumentParser(
         description="Input basic record section params",
-        formatter_class=argparse.RawTextHelpFormatter,
+        # formatter_class=argparse.RawTextHelpFormatter,
                                      )
 
     parser.add_argument("-p", "--pysep_path", default="./", type=str, nargs="?",