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Add initial fixed-affected-matching work #1228 #1249

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1e4079d
Add initial fixed-affected-matching work #1228
johnmhoran Jul 26, 2023
624f047
Explore context and Package class approaches for affected-fixed packa…
johnmhoran Jul 28, 2023
945b811
Add Prefetch and univers-based version comparison #1228
johnmhoran Jul 30, 2023
6497e90
Update affected-fixed package matching #1228
johnmhoran Aug 8, 2023
b6dba78
Improve matching and reporting code and UI #1228
johnmhoran Aug 10, 2023
814cd06
Add univers version, revise sort and related code, update and add new…
johnmhoran Aug 14, 2023
eee1d79
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Aug 14, 2023
f920ded
Move weakness test #1228
johnmhoran Aug 15, 2023
40c1758
Modify UI, update dictionary and tests #1228
johnmhoran Aug 15, 2023
f370671
Begin replacing strings with objects in package details dictionary #1228
johnmhoran Aug 28, 2023
9f73ea4
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Aug 28, 2023
9ccaed7
Clean current package details template and related model code #1228
johnmhoran Aug 29, 2023
1a26613
Begin work on major-version issue #1228
johnmhoran Aug 30, 2023
b626762
Complete first round of major-version vetting #1228
johnmhoran Sep 6, 2023
005c094
Remove major-version code, clean comments etc. #1228
johnmhoran Sep 8, 2023
ab80c46
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 8, 2023
55f9678
Begin test refactoring #1228
johnmhoran Sep 11, 2023
cc45e2a
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 11, 2023
f904f09
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 11, 2023
b750d65
Finish package details code and template, refactor/create package-rel…
johnmhoran Sep 12, 2023
fe23fec
Commit the initial refactoring changes from last week #1228
johnmhoran Sep 18, 2023
4cdb629
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 18, 2023
89aab8f
Refactor package details-related code #1228
johnmhoran Sep 21, 2023
04824e8
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 21, 2023
e2e4e13
Update Package details UI and Package API #1228
johnmhoran Sep 27, 2023
c76a43d
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Sep 27, 2023
7a8f83b
Save test experiments including commented-out variations #1228
johnmhoran Sep 27, 2023
2fdc594
Fix 1 of 4 failing API tests #1228
johnmhoran Sep 27, 2023
1bb4f20
Add initial fixed-affected-matching work #1228
johnmhoran Jul 26, 2023
dff950f
Explore context and Package class approaches for affected-fixed packa…
johnmhoran Jul 28, 2023
627d117
Add Prefetch and univers-based version comparison #1228
johnmhoran Jul 30, 2023
65d82a7
Update affected-fixed package matching #1228
johnmhoran Aug 8, 2023
3b34e46
Improve matching and reporting code and UI #1228
johnmhoran Aug 10, 2023
eb69a01
Add univers version, revise sort and related code, update and add new…
johnmhoran Aug 14, 2023
9a9401a
Move weakness test #1228
johnmhoran Aug 15, 2023
5c6838c
Modify UI, update dictionary and tests #1228
johnmhoran Aug 15, 2023
3ef542b
Begin replacing strings with objects in package details dictionary #1228
johnmhoran Aug 28, 2023
1045b36
Clean current package details template and related model code #1228
johnmhoran Aug 29, 2023
57007b9
Begin work on major-version issue #1228
johnmhoran Aug 30, 2023
1ffccbe
Complete first round of major-version vetting #1228
johnmhoran Sep 6, 2023
dc701ca
Remove major-version code, clean comments etc. #1228
johnmhoran Sep 8, 2023
f0bdd3b
Begin test refactoring #1228
johnmhoran Sep 11, 2023
4314820
Finish package details code and template, refactor/create package-rel…
johnmhoran Sep 12, 2023
df7f404
Commit the initial refactoring changes from last week #1228
johnmhoran Sep 18, 2023
e475e5d
Refactor package details-related code #1228
johnmhoran Sep 21, 2023
6a72c58
Update Package details UI and Package API #1228
johnmhoran Sep 27, 2023
f5e267c
Save test experiments including commented-out variations #1228
johnmhoran Sep 27, 2023
ce2c6cf
Fix 1 of 4 failing API tests #1228
johnmhoran Sep 27, 2023
7c412ed
Update API including "lesser" fixed by versions, fix and update faili…
johnmhoran Sep 30, 2023
eecd504
Update APITestCasePackage() class #1228
johnmhoran Oct 3, 2023
9978841
Test lack of "vulnerability" property #1228
johnmhoran Oct 18, 2023
6cd41d3
Update get_affected_vulnerabilities() and test #1228
johnmhoran Oct 26, 2023
e111dbe
Update MinimalPackageSerializer() and missing-vulnerability-key test …
johnmhoran Oct 28, 2023
5eaa9ce
Append inside the if condition #1228
johnmhoran Oct 28, 2023
4ce5d51
Update get_vulnerability() method #1228
johnmhoran Nov 1, 2023
f1a0530
Enable test_models.py and fix failing tests #1228
johnmhoran Nov 22, 2023
9ec2a6a
Update per PR comments #1228
johnmhoran Nov 22, 2023
91c1817
Convert Package method to PackageQuerySet method, clean code and test…
johnmhoran Nov 23, 2023
3dac483
Merge branch '1228-fixed-affected-version-matching' of https://github…
TG1999 Nov 23, 2023
2abcba0
Fix failing tests
TG1999 Nov 24, 2023
0ec7d6c
Add property on functions in models
TG1999 Nov 24, 2023
7a512c2
Merge branch 'main' into 1228-fixed-affected-version-matching #1228
johnmhoran Nov 28, 2023
26c0239
Add and fix tests, address other comments #1228
johnmhoran Nov 29, 2023
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60 changes: 54 additions & 6 deletions vulnerabilities/api.py
Original file line number Diff line number Diff line change
Expand Up @@ -48,11 +48,30 @@ class MinimalPackageSerializer(serializers.HyperlinkedModelSerializer):
Used for nesting inside vulnerability focused APIs.
"""

def get_affected_vulnerabilities(self, package):
parent_affected_vulnerabilities = package.fixed_package_details.get("vulnerabilities") or []
affected_vulnerabilities = []

for vuln in parent_affected_vulnerabilities:
affected_vulnerabilities.append(self.get_vulnerability(vuln))
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This is a good case to use a list comprehension:

affected_vulnerabilities = [
    self.get_vulnerability(vuln) for vuln in parent_affected_vulnerabilities
]

Also, what does vuln stand for? I'm guessing vulnerability and in that case, get_vulnerability(vulnerability) is not great.

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Thanks for this @tdruez . Re renaming, when you see terms or functions with names you don't like, if possible please suggest an alternative name that's acceptable so we don't repeat the process of me choosing a different name that you also don't like. ;-)

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@tdruez I can't think of a better naming convention so leaving as is. It's clearly labelled and I don't see a problem. Specific renaming suggestions welcome from anyone and everyone.


return affected_vulnerabilities

def get_vulnerability(self, vuln):
affected_vulnerability = {}

vulnerability = vuln.get("vulnerability")
if vulnerability:
affected_vulnerability["vulnerability"] = vulnerability.vulnerability_id
return affected_vulnerability

affected_by_vulnerabilities = serializers.SerializerMethodField("get_affected_vulnerabilities")

purl = serializers.CharField(source="package_url")

class Meta:
model = Package
fields = ["url", "purl", "is_vulnerable"]
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fields = ["url", "purl", "is_vulnerable", "affected_by_vulnerabilities"]


class MinimalVulnerabilitySerializer(serializers.HyperlinkedModelSerializer):
Expand Down Expand Up @@ -99,7 +118,6 @@ class Meta:


class VulnerabilitySerializer(serializers.HyperlinkedModelSerializer):

fixed_packages = MinimalPackageSerializer(
many=True, source="filtered_fixed_packages", read_only=True
)
Expand All @@ -126,6 +144,20 @@ class PackageSerializer(serializers.HyperlinkedModelSerializer):
Lookup software package using Package URLs
"""

next_non_vulnerable_version = serializers.SerializerMethodField("get_next_non_vulnerable")

def get_next_non_vulnerable(self, package):
next_non_vulnerable = package.fixed_package_details.get("next_non_vulnerable", None)
if next_non_vulnerable:
return next_non_vulnerable.version

latest_non_vulnerable_version = serializers.SerializerMethodField("get_latest_non_vulnerable")

def get_latest_non_vulnerable(self, package):
latest_non_vulnerable = package.fixed_package_details.get("latest_non_vulnerable", None)
if latest_non_vulnerable:
return latest_non_vulnerable.version

purl = serializers.CharField(source="package_url")

affected_by_vulnerabilities = serializers.SerializerMethodField("get_affected_vulnerabilities")
Expand All @@ -134,7 +166,7 @@ class PackageSerializer(serializers.HyperlinkedModelSerializer):

def get_fixed_packages(self, package):
"""
Return a queryset of all packages that fixes a vulnerability with
Return a queryset of all packages that fix a vulnerability with
same type, namespace, name, subpath and qualifiers of the `package`
"""
return Package.objects.filter(
Expand All @@ -149,7 +181,7 @@ def get_fixed_packages(self, package):
def get_vulnerabilities_for_a_package(self, package, fix) -> dict:
"""
Return a mapping of vulnerabilities data related to the given `package`.
Return vulnerabilities that affects the `package` if given `fix` flag is False,
Return vulnerabilities that affect the `package` if given `fix` flag is False,
otherwise return vulnerabilities fixed by the `package`.
"""
fixed_packages = self.get_fixed_packages(package=package)
Expand All @@ -175,9 +207,23 @@ def get_fixed_vulnerabilities(self, package) -> dict:

def get_affected_vulnerabilities(self, package) -> dict:
"""
Return a mapping of vulnerabilities that affects the given `package`.
Return a mapping of vulnerabilities that affect the given `package` (including packages that
fix each vulnerability and whose version is greater than the `package` version).
"""
return self.get_vulnerabilities_for_a_package(package=package, fix=False)
excluded_purls = []
package_vulnerabilities = self.get_vulnerabilities_for_a_package(package=package, fix=False)

for vuln in package_vulnerabilities:
for pkg in vuln["fixed_packages"]:
real_purl = PackageURL.from_string(pkg["purl"])
if package.version_class(real_purl.version) <= package.current_version:
excluded_purls.append(pkg)

vuln["fixed_packages"] = [
pkg for pkg in vuln["fixed_packages"] if pkg not in excluded_purls
]

return package_vulnerabilities

class Meta:
model = Package
Expand All @@ -190,6 +236,8 @@ class Meta:
"version",
"qualifiers",
"subpath",
"next_non_vulnerable_version",
"latest_non_vulnerable_version",
"affected_by_vulnerabilities",
"fixing_vulnerabilities",
]
Expand Down
166 changes: 165 additions & 1 deletion vulnerabilities/models.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,7 @@
from django.core.validators import MinValueValidator
from django.db import models
from django.db.models import Count
from django.db.models import Prefetch
from django.db.models import Q
from django.db.models.functions import Length
from django.db.models.functions import Trim
Expand All @@ -32,6 +33,8 @@
from packageurl.contrib.django.models import PackageURLQuerySet
from packageurl.contrib.django.models import without_empty_values
from rest_framework.authtoken.models import Token
from univers import versions
from univers.version_range import RANGE_CLASS_BY_SCHEMES

from vulnerabilities.severity_systems import SCORING_SYSTEMS
from vulnerabilities.utils import build_vcid
Expand Down Expand Up @@ -67,6 +70,12 @@ def paginated(self, per_page=5000):


class VulnerabilityQuerySet(BaseQuerySet):
def affecting_vulnerabilities(self):
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"""
Return a queryset of Vulnerability that affect a package.
"""
return self.filter(packagerelatedvulnerability__fix=False)

def with_cpes(self):
"""
Return a queryset of Vulnerability that have one or more NVD CPE references.
Expand Down Expand Up @@ -404,6 +413,24 @@ def purl_to_dict(purl: PackageURL):


class PackageQuerySet(BaseQuerySet, PackageURLQuerySet):
def get_fixed_by_package_versions(self, purl: PackageURL, fix=True):
"""
Return a queryset of all the package versions of this `package` that fix any vulnerability.
If `fix` is False, return all package versions whether or not they fix a vulnerability.
"""
filter_dict = {
"name": purl.name,
"namespace": purl.namespace,
"type": purl.type,
"qualifiers": purl.qualifiers,
"subpath": purl.subpath,
}

if fix:
filter_dict["packagerelatedvulnerability__fix"] = True

return Package.objects.filter(**filter_dict).distinct()

def get_or_create_from_purl(self, purl: PackageURL):
"""
Return an existing or new Package (created if neeed) given a
Expand Down Expand Up @@ -601,7 +628,6 @@ def __str__(self):
return self.package_url

@property
# TODO: consider renaming to "affected_by"
def affected_by(self):
"""
Return a queryset of vulnerabilities affecting this package.
Expand Down Expand Up @@ -642,6 +668,144 @@ def get_absolute_url(self):
"""
return reverse("package_details", args=[self.purl])

def sort_by_version(self, packages):
"""
Return a list of `packages` sorted by version.
"""
if not packages:
return []

return sorted(
packages,
key=lambda x: self.version_class(x.version),
)

@property
def version_class(self):
return RANGE_CLASS_BY_SCHEMES[self.type].version_class

@property
def current_version(self):
return self.version_class(self.version)

@property
def fixed_package_details(self):
"""
Return a mapping of vulnerabilities that affect this package and the next and
latest non-vulnerable versions.
"""
package_details = {}
package_details["purl"] = PackageURL.from_string(self.purl)

next_non_vulnerable, latest_non_vulnerable = self.get_non_vulnerable_versions()
package_details["next_non_vulnerable"] = next_non_vulnerable
package_details["latest_non_vulnerable"] = latest_non_vulnerable

package_details["vulnerabilities"] = self.get_affecting_vulnerabilities()

return package_details

def get_non_vulnerable_versions(self):
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Missing unit test

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Test added yesterday.

"""
Return a tuple of the next and latest non-vulnerable versions as PackageURLs. Return a tuple of
(None, None) if there is no non-vulnerable version.
"""
package_versions = Package.objects.get_fixed_by_package_versions(self, fix=False)

non_vulnerable_versions = []
for version in package_versions:
if not version.is_vulnerable:
non_vulnerable_versions.append(version)

later_non_vulnerable_versions = []
for non_vuln_ver in non_vulnerable_versions:
if self.version_class(non_vuln_ver.version) > self.current_version:
later_non_vulnerable_versions.append(non_vuln_ver)

if later_non_vulnerable_versions:
sorted_versions = self.sort_by_version(later_non_vulnerable_versions)
next_non_vulnerable_version = sorted_versions[0]
latest_non_vulnerable_version = sorted_versions[-1]

next_non_vulnerable = PackageURL.from_string(next_non_vulnerable_version.purl)
latest_non_vulnerable = PackageURL.from_string(latest_non_vulnerable_version.purl)

return next_non_vulnerable, latest_non_vulnerable

return None, None

def get_affecting_vulnerabilities(self):
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Missing unit test

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Test added yesterday.

"""
Return a list of vulnerabilities that affect this package together with information regarding
the versions that fix the vulnerabilities.
"""
package_details_vulns = []

fixed_by_packages = Package.objects.get_fixed_by_package_versions(self, fix=True)

package_vulnerabilities = self.vulnerabilities.affecting_vulnerabilities().prefetch_related(
Prefetch(
"packages",
queryset=fixed_by_packages,
to_attr="fixed_packages",
)
)

for vuln in package_vulnerabilities:
package_details_vulns.append({"vulnerability": vuln})
later_fixed_packages = []

for fixed_pkg in vuln.fixed_packages:
if fixed_pkg not in fixed_by_packages:
continue
fixed_version = self.version_class(fixed_pkg.version)
if fixed_version > self.current_version:
later_fixed_packages.append(fixed_pkg)

next_fixed_package = None
next_fixed_package_vulns = []

sort_fixed_by_packages_by_version = []
if later_fixed_packages:
sort_fixed_by_packages_by_version = self.sort_by_version(later_fixed_packages)

fixed_by_pkgs = []

for vuln_details in package_details_vulns:
if vuln_details["vulnerability"] != vuln:
continue
vuln_details["fixed_by_purl"] = []
vuln_details["fixed_by_purl_vulnerabilities"] = []

for fixed_by_pkg in sort_fixed_by_packages_by_version:
fixed_by_package_details = {}
fixed_by_purl = PackageURL.from_string(fixed_by_pkg.purl)
next_fixed_package_vulns = list(fixed_by_pkg.affected_by)

fixed_by_package_details["fixed_by_purl"] = fixed_by_purl
fixed_by_package_details[
"fixed_by_purl_vulnerabilities"
] = next_fixed_package_vulns
fixed_by_pkgs.append(fixed_by_package_details)

vuln_details["fixed_by_package_details"] = fixed_by_pkgs

return package_details_vulns

@property
def fixing_vulnerabilities(self):
"""
Return only packages fixing a vulnerability .
"""
return self.vulnerabilities.all().filter(packagerelatedvulnerability__fix=True)
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The all() is not needed since your apply a filter.

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Deleted .all().


@property
def affecting_vulnerabilities(self):
"""
Return only packages fixing a vulnerability .
"""
return self.vulnerabilities.all().filter(packagerelatedvulnerability__fix=False)
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The all() is not needed since your apply a filter.

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Deleted .all().



class PackageRelatedVulnerability(models.Model):
"""
Expand Down
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