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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    234 360

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 189 93

  3. dragonstar2019 dragonstar2019 Public

    135 98

  4. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 102 35

  5. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 101 8

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 89 55

Repositories

Showing 10 of 82 repositories
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Dec 1, 2024
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 5 MIT 0 2 0 Updated Nov 27, 2024
  • AmpBinner Public

    A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data

    WGLab/AmpBinner’s past year of commit activity
    Python 10 MIT 2 4 0 Updated Nov 27, 2024
  • LlamaDx Public

    LlamaDx is an advanced LLM technique, pretrained on LLama 3.2 models, designed to providing some predictions and medical knowledges for doctors, nurses and patients through clear and comprehensive explanations. It is an AI chatbot where the users can ask question and provide relevant information for disease diagnosis.

    WGLab/LlamaDx’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 24, 2024
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    WGLab/NanoCaller’s past year of commit activity
    Python 101 MIT 8 29 0 Updated Nov 17, 2024
  • PhenoGPT Public
    WGLab/PhenoGPT’s past year of commit activity
    Jupyter Notebook 19 MIT 5 3 0 Updated Nov 11, 2024
  • PhenoGPT2 Public

    PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

    WGLab/PhenoGPT2’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 30, 2024
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR’s past year of commit activity
    234 360 123 0 Updated Oct 24, 2024
  • InFuse Public

    InFuse: Isoform Novety and Fusion Detection

    WGLab/InFuse’s past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2024
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 13 MIT 2 5 0 Updated Sep 27, 2024
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