Skip to content

Commit

Permalink
Add short note about limitations of usearch
Browse files Browse the repository at this point in the history
  • Loading branch information
VishnuRaghuram94 authored Jan 30, 2021
1 parent 0e3e9be commit 26a1a62
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,8 @@ For example (Use the version appropriate for your operating system):
chmod 755 usearch11.0.667_i86linux32

cp ./usearch11.0.667_i86linux32 $(dirname "$(which agrvate)")


***NOTE:*** Currently, only the 32-bit version of usearch is free to use. This version is not supported by WSL or MacOS (post-Catalina). We understand this limitation and are working on an alternate workflow. But for now it is recommended to use AgrVATE on Linux machines or older versions MacOS.

---

Expand Down Expand Up @@ -101,7 +102,7 @@ Shen W, Le S, Li Y, Hu F (2016) SeqKit: A Cross-Platform and Ultrafast Toolkit f
A new directory with suffix ```-results``` will be created where all the following files can be found

***NOTE:*** **There are 15 possible kmers for each agr group per genome. The analyses will continue even if only one kmer matches a given agr-group but it should be noted that < 5 kmers matching leads to a low confidence agr-group call. Col 3 in ```fasta-summary.tab``` shows the number of kmers matched**
***NOTE:*** There are 15 possible kmers for each agr group per genome. The analyses will continue even if only one kmer matches a given agr-group but it should be noted that < 5 kmers matching leads to a low confidence agr-group call. Col 3 in ```fasta-summary.tab``` shows the number of kmers matched

* __**fasta-summary.tab:**__

Expand Down

0 comments on commit 26a1a62

Please sign in to comment.