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Unify wording in different catalog item docs
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dometto committed Jul 4, 2024
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6 changes: 2 additions & 4 deletions docs/workspaces/programming/matlab.qmd
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Expand Up @@ -29,11 +29,9 @@ This workspace is an Ubuntu Desktop workspace with MATLAB installed. Ubuntu Desk
## Access
This workspace can be accessed via the yellow 'Access' button. You need a TOTP to login to your workspace, see [Workspace access with TOTP](https://servicedesk.surf.nl/wiki/display/WIKI/Log+in+to+your+workspace#Logintoyourworkspace-WorkspaceAccesswithTOTP).

## Data transfer options
First create a working directory on the [Storage Volume](../../first-steps.qmd#where-can-i-find-the-storage-volume)
{{< include ../partials/_data_transfer.qmd >}}

When data is stored on Surfdrive (or Researchdrive, Onedrive, Dropbox, etc.), use the internet browser Firefox **within** the workspace to download files from Surfdrive (or alternative storage platform). Click on 'Applications' in the top left corner of the screen and click on 'Internet' to find Firefox.
Then go to e.g. surfdrive.surf.nl (or dropbox.com, etc.) to open the web portal.
The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.

## Usage
### Prerequisites:
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2 changes: 1 addition & 1 deletion docs/workspaces/programming/miniconda.qmd
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Expand Up @@ -48,7 +48,7 @@ When you login, `miniconda` will be ready for use. See the [miniconda docs](http

{{< include ../partials/_data_transfer.qmd >}}

The recommended [iBridges client](../../manuals/ibridges.qmd) is preinstalled.
The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.

### Installing additional software

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6 changes: 3 additions & 3 deletions docs/workspaces/programming/python-workbench.qmd
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Expand Up @@ -54,11 +54,11 @@ If you prefer all users on the machine to have a single shared `miniconda` envir

### Python Workbench CLI

For the Python Workbench CLI (command line) version of this Catalog Item, you can [login using SSH](../../first-steps.qmd#ssh).
For the Python Workbench CLI (command line) flavour of this Catalog Item, you can [login using SSH](../../first-steps.qmd#ssh).

### Python Workbench Desktop

For the Python Workbench CLI (command line) version of this Catalog Item, you can [login using your browser](../../first-steps.qmd#browser-access-to-a-desktop-environment). It is also possible to login via SSH, as described for Python Workbench CLI above.
For the Python Workbench Desktop flavour of this Catalog Item, you can [login using your browser](../../first-steps.qmd#browser-access-to-a-desktop-environment). It is also possible to login via SSH, as described above.

## Usage

Expand Down Expand Up @@ -88,7 +88,7 @@ Also see the [poetry docs](https://python-poetry.org/docs/).
{{< include ../partials/_data_transfer.qmd >}}
The recommended [iBridges client](../../manuals/ibridges.qmd) is preinstalled.
The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.
### Installing additional software
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21 changes: 9 additions & 12 deletions docs/workspaces/programming/rstudio.qmd
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Expand Up @@ -17,11 +17,16 @@ support: SURF
---

## Description
This workspace can be used to work with R and RStudio. The workspace also comes with a (linux) terminal (aka command line) to install additional tools when relevant.
This workspace can be used to work with R and [RStudio](https://www.rstudio.com/). RStudio can be accessed conveniently from the browser.

Upon request we can help you to automate the installation of R packages or automate other installations (e.g. tools for data transfer). Automating these steps will make it easier to work following our [best practices](../../responsible-use.qmd).
The workspace also comes with a (linux) terminal (aka command line) to install additional tools when relevant.

There are various flavours of this catalog item:

[Contact us if you need help with installations](../../contact.qmd).
- R-Studio *(comes with R v.3)*
- R-Studio - R4 *(comes with R v.4)*

Upon request we can help you to automate the installation of R packages or automate other installations (e.g. tools for data transfer). Automating these steps will make it easier to work following our [best practices](../../responsible-use.qmd).

## Creation

Expand All @@ -32,15 +37,7 @@ Upon request we can help you to automate the installation of R packages or autom
## Access
This workspace can be accessed via the yellow 'Access' button. You need a TOTP to login to your workspace, see [Workspace access with TOTP](https://servicedesk.surf.nl/wiki/display/WIKI/Log+in+to+your+workspace#Logintoyourworkspace-WorkspaceAccesswithTOTP).

## Data transfer options
First create a working directory on the [Storage Volume](../../first-steps.qmd#where-can-i-find-the-storage-volume) using the file browser in the Jupyter dashboard.

The RStudio interface has an Upload button to directly upload data from your PC to the workspace.

Alternatively it is possible to use the terminal to transfer data from other, such as Yoda, or Surfdrive:

- [Data transfer and Yoda](../../manuals/icommands.qmd)
- [Data transfer and Surfdrive](../../manuals/rclone-researchcloud.qmd)
{{< include ../partials/_data_transfer.qmd >}}

## Usage

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4 changes: 3 additions & 1 deletion docs/workspaces/programming/stata.qmd
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Expand Up @@ -28,7 +28,9 @@ support: UU

## Access

## Data transfer options
{{< include ../partials/_data_transfer.qmd >}}

The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.

## Usage

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3 changes: 3 additions & 0 deletions docs/workspaces/templates/template.qmd
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Expand Up @@ -36,6 +36,9 @@ Link to access methods in the first steps page here.

{{< include ../partials/_data_transfer.qmd >}}

The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.


### Installing additional software

The user has [admin rights](../../responsible-use.qmd#installation-of-software) to install additional software on the system (on a terminal, use `sudo <yourcommand>`).
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