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Gene Ontology Networks #1078

Gene Ontology Networks

Gene Ontology Networks #1078

name: Gene Ontology Networks
on:
push:
branches: [ main ]
schedule:
- cron: '0 0 * * *' # This will happen once a day at 00 hours.
jobs:
build:
runs-on: Ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Container
run: docker pull rocker/tidyverse:4.1.0
##################################################################
# YOU ONLY NEED TO CHANGE THIS BIT -------------------------------
- name: Render
run: |
cd 04-go-networks
docker run -v$(pwd):/home/report -w/home/report \
rocker/tidyverse:4.1.0 \
Rscript -e 'system("apt-get update && apt-get install -y --no-install-recommends libglpk-dev");install.packages("netplot");rmarkdown::render("README.Rmd")'
##################################################################
- name: Commit results
run: |
cd 04-go-networks
git add README_files/figure-gfm/*
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
git commit -a -m 'Updating the GO Networks report' || echo Nothing has changed
git push origin || echo "No changes to commit"