Interface with FHIR bundle and support ontologies #207

	name: Checks and Test

	on:
	pull_request:
	branches: [main]
	paths: ['personal_graph/**']

	jobs:
	check:
	runs-on: ubuntu-latest # host's operating system
	steps: # each job consists of 1+ steps
	- name: Checkout commit # download the code from triggering commit
	uses: actions/checkout@v4

	- name: Set up Python and Poetry
	uses: actions/setup-python@v4
	with:
	python-version: '3.x'

	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	virtualenvs-create: true
	virtualenvs-in-project: true
	installer-parallel: true

	- name: Install dependencies
	run: poetry install --no-interaction --no-root

	- name: Format with Ruff
	run: poetry run ruff format --check .

	- name: Lint with Ruff
	run: poetry run ruff check -- .

	- name: Type check
	run: poetry run python -m mypy .

	test:
	runs-on: ubuntu-latest
	needs: check
	steps: # each job consists of 1+ steps
	- name: Checkout commit # download the code from triggering commit
	uses: actions/checkout@v4

	- name: Set up Python and Poetry
	uses: actions/setup-python@v4
	with:
	python-version: '3.x'

	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	virtualenvs-create: true
	virtualenvs-in-project: true
	installer-parallel: true

	- name: Install dependencies
	run: \|
	cd personal_graph
	poetry install --no-interaction --no-root --with dev

	- name: Test with pytest
	run: \|
	cd tests
	poetry run pytest -vvv

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