Interface with FHIR bundle and support ontologies #204
Workflow file for this run
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| name: Checks and Test | |
| on: | |
| pull_request: | |
| branches: [main] | |
| paths: ['personal_graph/**'] | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest # host's operating system | |
| steps: # each job consists of 1+ steps | |
| - name: Checkout commit # download the code from triggering commit | |
| uses: actions/checkout@v4 | |
| - name: Set up Python and Poetry | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Install dependencies | |
| run: poetry install --no-interaction --no-root | |
| - name: Format with Ruff | |
| run: poetry run ruff format --check . | |
| - name: Lint with Ruff | |
| run: poetry run ruff check -- . | |
| - name: Type check | |
| run: poetry run python -m mypy . | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: check | |
| steps: # each job consists of 1+ steps | |
| - name: Checkout commit # download the code from triggering commit | |
| uses: actions/checkout@v4 | |
| - name: Set up Python and Poetry | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Install dependencies | |
| run: | | |
| cd personal_graph | |
| poetry install --no-interaction --no-root --with dev | |
| - name: Test with pytest | |
| run: | | |
| cd tests | |
| poetry run pytest -vvv |