This package is based on the MCMCglmm package and runs a MCMCglmm analysis on multiple trees. This code has been used prior to this package release in Healy et. al. (2014). Please send me an email or a pull request if you find/have any issue using this package.
## Installing the package
if(!require(devtools)) install.packages("devtools")
library(devtools)
install_github("TGuillerme/mulTree", ref = "release")
library(mulTree)The following installs the latest released version (see patch notes below). For the piping hot development version (not recommended), replace the ref="release" option by ref="master". If you're using the master branch, see the latest developement in the patch note.
If you're using a PC and the package doesn't install correctly, it might be due to the fact that dependencies are not installed correctly. You can fix buy downloading R's latest version and installing the missing packages manualy:
## Install the missing packages
install.packages(c("MCMCglmm", "coda", "hdrcde", "snow", "ape", "corpcor", "curl"))- The package manual here (in .Rnw) or here (in .pdf).
- An additional example of running simple phylogenetic models is here.
- 2020-04-12 - 1.3.7
- Updated package to R version 3.6.3
- Updated package to
apeversion 5.3
Previous patch notes and the next version ones can be seen here.
Thomas Guillerme and Kevin Healy
Eldar Rakhimberdiev, Hugo Gruson.
If you are using this package, please cite (if the DOI is in there, even better!):
- Guillerme, T. & Healy, K. (2014). mulTree: a package for running MCMCglmm analysis on multiple trees. ZENODO. 10.5281/zenodo.12902
Check out the papers that have cited mulTree since 2014 here (>50):
