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@TARGENE

TarGene

Targeted Estimation of Genetic Effects

TarGene

Your one-way ticket to Targeted-Learning of genetic effects! ✈️

Pipeline

TarGene is a Nextflow pipeline for the estimation of genetic effects using the Targeted Learning framework.

Linked repositories

Repository Description Dev Build Status Code Coverage Current Release
targene-pipeline TarGene Pipeline GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TMLE.jl TMLE package GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TMLECLI.jl TMLE CLI GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TargeneCore.jl Core functionalities used by the pipeline GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
UKBMain.jl Traits extraction from the UK-Biobank GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
Simulations.jl Evaluation of Semi-Parametric Estimators GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)

Popular repositories Loading

  1. TMLE.jl TMLE.jl Public

    A pure Julia implementation of the Targeted Minimum Loss-based Estimation

    Julia 16 2

  2. targene-pipeline targene-pipeline Public

    Nextflow pipeline for Targeted-Learning of genetic effects

    Nextflow 11

  3. TargeneCore.jl TargeneCore.jl Public

    Core Functionalities for TarGene

    Julia 2 2

  4. TMLECLI.jl TMLECLI.jl Public

    Julia 2

  5. UKBMain.jl UKBMain.jl Public

    To work with a UKB main dataset

    Julia 1

  6. .github .github Public

Repositories

Showing 10 of 11 repositories
  • TargeneCore.jl Public

    Core Functionalities for TarGene

    TARGENE/TargeneCore.jl’s past year of commit activity
    Julia 2 Apache-2.0 2 3 2 Updated Nov 18, 2024
  • targene-pipeline Public

    Nextflow pipeline for Targeted-Learning of genetic effects

    TARGENE/targene-pipeline’s past year of commit activity
    Nextflow 11 MIT 0 3 0 Updated Nov 13, 2024
  • TARGENE/ld-block-removal’s past year of commit activity
    Nextflow 0 0 2 0 Updated Nov 2, 2024
  • TARGENE/TMLECLI.jl’s past year of commit activity
    Julia 2 MIT 0 2 0 Updated Sep 6, 2024
  • UKBMain.jl Public

    To work with a UKB main dataset

    TARGENE/UKBMain.jl’s past year of commit activity
    Julia 1 MIT 0 1 0 Updated Sep 6, 2024
  • TARGENE/Simulations.jl’s past year of commit activity
    Julia 0 MIT 0 0 0 Updated Aug 29, 2024
  • TarViz Public

    Visualization dashboard for TarGene results

    TARGENE/TarViz’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Aug 29, 2024
  • .github Public
    TARGENE/.github’s past year of commit activity
    0 0 0 0 Updated Aug 28, 2024
  • TMLE.jl Public

    A pure Julia implementation of the Targeted Minimum Loss-based Estimation

    TARGENE/TMLE.jl’s past year of commit activity
    Julia 16 MIT 2 18 1 Updated Aug 21, 2024
  • TarGeneUtils.jl Public

    Functions used throughout TarGene

    TARGENE/TarGeneUtils.jl’s past year of commit activity
    0 MIT 0 0 0 Updated May 20, 2024

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