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1. MitoGeneExtractor MitoGeneExtractor Public

   Forked from cmayer/MitoGeneExtractor

   The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.

   C++ 2 1

2. skim2mito skim2mito Public

   Forked from o-william-white/skim2mito

   A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims

   Python 1

3. BOLDigger2_batch BOLDigger2_batch Public

   Batch submission of cox1 barcodes to BOLDigger2

   Shell 1 1

4. sample-processing sample-processing Public

   Python script to take BOLD-downloaded specimen metadata and paths to raw reads, and creates necessary files for Skim2mito and MGE analysis piplines, and upload of reads to ENA.

   Python 1 2

5. ena-taxid-creation ena-taxid-creation Public

   python script to create ENA submission form for generation of new species-level taxonomics IDs

   Python 1 1

6. ena-read-upload ena-read-upload Public

   Collection of script to generate sample registration forms and bulk-ena-webincli spreadsheet for submission of reads to ENA.

   Python 1 1