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@SBU-BMI

Department of Biomedical Informatics

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  1. wsinfer wsinfer Public

    🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 60 11

  2. quip_cnn_segmentation quip_cnn_segmentation Public

    CNN based segmentation codes

    Python 47 17

  3. champkit champkit Public

    Benchmarking toolkit for patch-based histopathology image classification.

    Python 37 4

  4. quip_distro quip_distro Public

    JavaScript 31 16

  5. u24_lymphocyte u24_lymphocyte Public

    Python 30 20

  6. quip_cancer_segmentation quip_cancer_segmentation Public

    Python 15 4

Repositories

Showing 10 of 115 repositories
  • wsinfer-mil Public

    CLI tool to run specimen-level inference on whole slide images

    SBU-BMI/wsinfer-mil’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 30, 2024
  • hatch Public Forked from ebremer/hatch
    SBU-BMI/hatch’s past year of commit activity
    Java 1 GPL-2.0 2 0 0 Updated Nov 5, 2024
  • PathDB Public
    SBU-BMI/PathDB’s past year of commit activity
    PHP 2 BSD-3-Clause 5 1 11 Updated Jul 24, 2024
  • wsinfer Public

    🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    SBU-BMI/wsinfer’s past year of commit activity
    Python 60 Apache-2.0 11 13 (7 issues need help) 0 Updated Jul 11, 2024
  • wsinfer-zoo Public

    Model zoo for WSInfer

    SBU-BMI/wsinfer-zoo’s past year of commit activity
    Python 1 Apache-2.0 0 1 0 Updated Jul 9, 2024
  • quip_distro Public
    SBU-BMI/quip_distro’s past year of commit activity
    JavaScript 31 BSD-3-Clause 16 6 3 Updated May 2, 2024
  • MappingOHDSI2HDF5 Public

    Build JSON mappings for mapping OHDSI tables to HDF5

    SBU-BMI/MappingOHDSI2HDF5’s past year of commit activity
    Jupyter Notebook 6 3 0 0 Updated Oct 23, 2023
  • region-templates Public

    Region Templates development

    SBU-BMI/region-templates’s past year of commit activity
    C++ 4 5 0 1 Updated Oct 11, 2023
  • til_align Public

    TIL Alignment

    SBU-BMI/til_align’s past year of commit activity
    R 0 Apache-2.0 1 1 0 Updated Aug 6, 2023
  • champkit Public

    Benchmarking toolkit for patch-based histopathology image classification.

    SBU-BMI/champkit’s past year of commit activity
    Python 37 Apache-2.0 4 3 0 Updated Jun 2, 2023
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