Pin plotly and kaleido #1628
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| name: RBniCSx CI | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 5 * * *" | |
| workflow_call: | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| if: >- | |
| ( | |
| ( | |
| github.event_name == 'schedule' | |
| && github.repository == 'RBniCS/RBniCSx' | |
| ) || ( | |
| github.event_name != 'schedule' | |
| && !( | |
| contains(github.event.head_commit.message, '[ci skip]') | |
| || contains(github.event.head_commit.message, '[skip ci]') | |
| ) | |
| ) | |
| ) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - backend: dolfinx-real | |
| container: ghcr.io/fenics/dolfinx/dolfinx:v0.7.1 | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-real-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| rm /usr/local/lib/python3.10/dist-packages/petsc4py/py.typed | |
| - backend: dolfinx-complex | |
| container: ghcr.io/fenics/dolfinx/dolfinx:v0.7.1 | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-complex-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| rm /usr/local/lib/python3.10/dist-packages/petsc4py/py.typed | |
| fail-fast: false | |
| container: | |
| image: ${{ matrix.container }} | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: dolfinx-v0.7.1 | |
| - name: Setup container | |
| run: ${{ matrix.setup_container }} | |
| - name: Install RBniCSx | |
| run: | | |
| python3 -m pip install .[docs,lint,tests,tutorials] | |
| python3 -c "import rbnicsx._cpp" | |
| shell: bash | |
| - name: Run documentation generation | |
| run: | | |
| cd docs && make html | |
| - name: Run unit tests (serial) | |
| run: | | |
| COVERAGE_UNIT_OMIT="" | |
| PYTEST_UNIT_OPTIONS="" | |
| COVERAGE_FILE=.coverage_unit_serial python3 -m coverage run --source=rbnicsx --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit | |
| - name: Run unit tests (parallel) | |
| run: | | |
| COVERAGE_UNIT_OMIT="" | |
| PYTEST_UNIT_OPTIONS="" | |
| COVERAGE_FILE=.coverage_unit_parallel mpirun -n 2 python3 -m coverage run --source=rbnicsx --parallel-mode --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit | |
| - name: Combine coverage reports | |
| run: | | |
| python3 -m coverage combine .coverage* | |
| python3 -m coverage report --fail-under=100 --show-missing --skip-covered | |
| - name: Import modules at least once, so that tutorials duration is not affected by module setup | |
| run: | | |
| python3 -m pytest --durations=0 --durations-min=1.0 tutorials/.imports.ipynb | |
| - name: Run tutorials (serial) | |
| run: | | |
| python3 -m pytest --tag-collapse --durations=0 --durations-min=1.0 tutorials | |
| - name: Run tutorials (parallel) | |
| run: | | |
| python3 -m pytest --tag-collapse --np=2 --durations=0 --durations-min=1.0 tutorials | |
| - name: Upload tutorials logs as an artifact in case of failure | |
| if: failure() || cancelled() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: "tutorials-logs-${{ matrix.backend }}" | |
| path: | | |
| tutorials/**/.ipynb_pytest/**/*.log* |