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rice-trait-ontology.obo
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rice-trait-ontology.obo
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format-version: 1.2
auto-generated-by: java
default-namespace: RiceTrait
ontology: co_320
[Term]
id: CO_320:0000004
name: grain length
namespace: RiceTrait
def: "Length of whole grain including the hull, defined as the distance from the base of the lowermost sterile lemma to the tip (apiculus) of the fertile lemma or palea" [CO:curators]
synonym: "GrLng, GRLT" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000005
name: grain width
namespace: RiceTrait
def: "Width of whole grain including the hull, defined as the distance across the fertile lemma and the palea at the widest point" [CO:curators]
synonym: "GrWdt, GRWD" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000006
name: leaf blade color
namespace: RiceTrait
def: "Color of the leaf lamina/blade" [CO:curators]
synonym: "LfBladCol" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000009
name: panicle number
namespace: RiceTrait
def: "Number of panicles per plant" [CO:curators]
synonym: "PanNo, PNO" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000011
name: leaf length
namespace: RiceTrait
def: "Length of penultimate leaf blade" [CO:curators]
synonym: "leaf blade length" EXACT []
synonym: "LfLng, LLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000013
name: leaf blade pubescence
namespace: RiceTrait
def: "Describes the pubescence, i.e. the hairiness, of the surface of the penultimate leaf blade" [CO:curators]
synonym: "LfBladPub, blpub, LBP" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000014
name: leaf angle
namespace: RiceTrait
def: "Position of the tip of the penultimate leaf blade relative to its base" [CO:curators]
synonym: "leaf attitude" EXACT []
synonym: "LfAng, LA" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000015
name: awning
namespace: RiceTrait
def: "Presence, distribution and length of awns" [CO:curators]
synonym: "awn type" EXACT []
synonym: "AwType" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000016
name: culm internode anthocyanin
namespace: RiceTrait
def: "Purplish markings, if any, on internodes on the culm/stem attributable to anthocyanin" [CO:curators]
synonym: "CulmINodAnth" EXACT []
synonym: "stem internode anthocyanin" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000017
name: flag leaf angle
namespace: RiceTrait
def: "The angle of attachment between the flag leaf blade and the main panicle axis" [CO:curators]
synonym: "flag leaf attitude" EXACT []
synonym: "FlgLfAng" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000018
name: panicle type
namespace: RiceTrait
def: "Panicle type, defined by the orientation of primary branches" [CO:curators]
synonym: "branch attitude" EXACT []
synonym: "PanTyp, PTY" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000020
name: grain thickness
namespace: RiceTrait
def: "The weight of a sample of whole grains including the hull" [CO:curators]
synonym: "GrThk, GRTH" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000021
name: leaf width
namespace: RiceTrait
def: "Width of penultimate leaf blade" [CO:curators]
synonym: "leaf blade width" EXACT []
synonym: "LfWdt, LWD" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000023
name: basal leaf sheath color
namespace: RiceTrait
def: "Colour of the outer surface of the basal leaf sheath" [CO:curators]
synonym: "BLSCol, BLSCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000025
name: ligule length
namespace: RiceTrait
def: "Length of ligule, defined as distance from the base of the collar to the tip of the ligule" [CO:curators]
synonym: "LigLng, LGL, LIGLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000026
name: ligule color
namespace: RiceTrait
def: "Color of the ligule" [CO:curators]
synonym: "LigCol, LIGCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000027
name: ligule shape
namespace: RiceTrait
def: "Shape of the ligule" [CO:curators]
synonym: "LigShp, LIGSH" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000028
name: collar color
namespace: RiceTrait
def: "Colour of the leaf collar" [CO:curators]
synonym: "CollCol, CCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000029
name: auricle color
namespace: RiceTrait
def: "Color of the auricle" [CO:curators]
synonym: "AurCol, AUCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000030
name: culm length
namespace: RiceTrait
def: "Length of the main culm (stem), defined as the distance from the soil surface to the base of the panicle" [CO:curators]
synonym: "CulmLng, CULT" EXACT []
synonym: "stem length" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000031
name: culm angle
namespace: RiceTrait
def: "Angle of inclination of the base of the main culm from vertical" [CO:curators]
synonym: "Culm habit," EXACT []
synonym: "CulmAng, CUAN" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:00000321
name: culm strength scale ses
namespace: RiceScale
is_a: CO_320:Ordinal ! Ordinal
relationship: scale_of CO_320:0000320 ! culm strength estimation - ses
[Term]
id: CO_320:0000033
name: panicle length
namespace: RiceTrait
def: "Length of panicle defined as the distance from the base to the tip of the panicle when the main axis of the panicle is held straight" [CO:curators]
synonym: "PanLng, PLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000034
name: secondary panicle branching
namespace: RiceTrait
def: "The abundance and distribution of spikelets borne on secondary branches of the panicle" [CO:curators]
synonym: "Pan2ndBr, SECOND_BR" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000035
name: panicle axis attitude
namespace: RiceTrait
def: "The attitude of the main axis of the panicle, which ranges from straight upright to droopy" [CO:curators]
synonym: "PanAxAtt, PA" EXACT []
synonym: "Panicle attitude" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000036
name: awn color
namespace: RiceTrait
def: "Colour of the awns, if present" [CO:curators]
synonym: "AwCol, AWCO" EXACT []
synonym: "awn colour" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000037
name: apiculus color
namespace: RiceTrait
def: "Color of the apiculus of the lemma" [CO:curators]
synonym: "ApCol, APCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000038
name: stigma color
namespace: RiceTrait
def: "Color of stigma" [CO:curators]
synonym: "StgmCol, STCO" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000039
name: lemma and palea color
namespace: RiceTrait
def: "Colour of the lemma and palea" [CO:curators]
synonym: "hull colour, glume colour" EXACT []
synonym: "LmPCol" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000040
name: lemma and palea pubescence
namespace: RiceTrait
def: "Describes the presence, distribution and type of hairs on the lemma and palea" [CO:curators]
synonym: "LmPb" EXACT []
synonym: "LmPPub, LPPUB, LmPb" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000041
name: sterile lemma color
namespace: RiceTrait
def: "Colour of the sterile lemmas" [CO:curators]
synonym: "glume color" EXACT []
synonym: "StrLmCol, SLCO, SLmc," EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000042
name: sterile lemma length
namespace: RiceTrait
def: "Length of sterile lemmas" [CO:curators]
synonym: "glume length" EXACT []
synonym: "StrLmLng, SLLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000055
name: alkali injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected in alkaline soils" [CO:curators]
synonym: "Alkali tolerance" EXACT []
synonym: "AlkInj" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000057
name: cold tolerance
namespace: RiceTrait
def: "Ability of a plant to grow and develop normally under cold conditions. Key periods of sensitivity are during seedling growth, tillering, and flowering" [CO:curators]
synonym: "ColdSens" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000058
name: drought recovery
namespace: RiceTrait
def: "The extent to which plants recover when soaked with water after exposure to drought. The extent of recovery depends strongly on the severity of drought." [CO:curators]
synonym: "DhtRecov" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000060
name: drought injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected by drought. Leaf rolling precedes leaf drying during drought. Response to drought is highly responsive to crop phenology, plant growth prior to stress, and the timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks during the vegetative stage to cause marked differences in response and at least 7 rainless days during the reproductive stage to cause severe drought injury. Repeated ratings are recommended through progress of the drought. Record the stage of plant growth when the stress occurred and the number of stress days." [CO:curators]
synonym: "DhtInj" EXACT []
synonym: "drought sensitivity" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000061
name: stem elongation
namespace: RiceTrait
def: "The ability of the stem to elongate as flood water rises and thus to keep the topmost leaves above water level" [CO:curators]
synonym: "elongation ability, elongation in deepwater" EXACT []
synonym: "StmElong" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000062
name: heat injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected by high temperature. The key period of sensitivity is during flowering" [CO:curators]
synonym: "heat tolerance" EXACT []
synonym: "HeatSens" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000063
name: iron toxicity injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected by high (toxic) iron content in the growing medium" [CO:curators]
synonym: "iron toxicity" EXACT []
synonym: "IronInj" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000064
name: kneeing ability
namespace: RiceTrait
def: "The ability of a stem, after it has fallen flat e.g. after floodwater recedes, to start growing upright from a young node (the knee)) and bear panicles, typically an ability expressed by deepwater varieties (applicable only in conditions where culms have fallen flat)" [CO:curators]
synonym: "CUKNEE, KnA" EXACT []
synonym: "KneeAb, CUKNEE, KnA" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000065
name: phosphorus deficiency damage
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected by a deficiency of phosphorus in the growing medium" [CO:curators]
synonym: "PDef" EXACT []
synonym: "phosphorus deficiency" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000066
name: salt injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected in soils or other growth medium with high salt content" [CO:curators]
synonym: "salt tolerance, salinity injury, salinity" EXACT []
synonym: "SaltInj" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000067
name: submergence tolerance
namespace: RiceTrait
def: "The ability of plants to survive a period of submergence" [CO:curators]
synonym: "SubTol" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000069
name: zinc deficiency injury
namespace: RiceTrait
def: "The extent to which plant growth is adversely affected by a deficiency of zinc in the growing medium" [CO:curators]
synonym: "zinc deficiency" EXACT []
synonym: "ZnDefInj" EXACT []
is_a: CO_320:Abiotic_stress ! Abiotic_stress
[Term]
id: CO_320:0000073
name: grain yield
namespace: RiceTrait
def: "Grain yield" [CO:curators]
synonym: "GrYld" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000074
name: panicle exsertion
namespace: RiceTrait
def: "Extent to which the panicle is exserted above (i.e. protrudes from), as opposed to being enclosed within, the flag leaf sheath" [CO:curators]
synonym: "PanExs, PEX" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000075
name: phenotypic acceptability
namespace: RiceTrait
def: "An overall assessment of phenotypic acceptability of the grains for the target breeding objectives, locations and markets" [CO:curators]
synonym: "PhenAcc" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000076
name: plant height
namespace: RiceTrait
def: "Plant height defined as distance from the soil surface to the highest point of the plant (panicle or flag leaf) excluding awns" [CO:curators]
synonym: "PlntHt" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000077
name: vigor
namespace: RiceTrait
def: "An overall description of the vigour of plant growth, combining several components such as number of tillers, plant height, number of leaves, canopy density" [CO:curators]
synonym: "PlntVg" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000078
name: panicle threshability
namespace: RiceTrait
def: "Describes the ease with which grains are removed from the panicle during threshing" [CO:curators]
synonym: "PanThr, PTH" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000079
name: tillering
namespace: RiceTrait
def: "Describes the abundance of tillers (shoots, stems) arising from the base of each plant" [CO:curators]
synonym: "Tillers per plant" EXACT []
synonym: "TillNo" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000080
name: lodging incidence
namespace: RiceTrait
def: "Describes the tendency of plants to lodge /(fall flat/)" [CO:curators]
synonym: "LodInc" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000082
name: maturity
namespace: RiceTrait
def: "Time elapsed from effective seeding date to grain ripening defined as when 80-85% of grains on panicle are mature (growth stage 9)" [CO:curators]
synonym: "time of maturity" EXACT []
synonym: "TMat" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000084
name: culm strength
namespace: RiceTrait
def: "The stiffness of the culm and its resilience to being bent over" [CO:curators]
synonym: "CulmStr, CUST" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000085
name: leaf senescence
namespace: RiceTrait
def: "Describes how soon leaves senesce" [CO:curators]
synonym: "LfSen, LSEN" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000086
name: seed germination
namespace: RiceTrait
def: "The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis." [CO:curators]
synonym: "SdGerm" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000088
name: time to heading
namespace: RiceTrait
def: "Time elapsed from the effective date of seeding to flowering (heading)" [CO:curators]
synonym: "days to flowering, time of heading" EXACT []
synonym: "HeadT, FLW" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000090
name: spikelet fertility
namespace: RiceTrait
def: "The proportion of spikelets on a harvested panicle that contain filled grains" [CO:curators]
synonym: "SpkFer, SPKF, SpFert" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000091
name: male sterility group
namespace: RiceTrait
def: "A classification of male sterility according to the type or cause of sterility" [CO:curators]
synonym: "MaleSterGp" EXACT []
is_a: CO_320:Fertility ! Fertility
[Term]
id: CO_320:0000092
name: abortion pattern
namespace: RiceTrait
def: "Describes the stage at which pollen grains abort in male sterile lines." [CO:curators]
synonym: "abortion stage" EXACT []
synonym: "AP" EXACT []
is_a: CO_320:Phenological ! Phenological
[Term]
id: CO_320:0000093
name: stigma exsertion
namespace: RiceTrait
def: "Describes the tendency of stigmas to be exserted on one or both sides of the florets" [CO:curators]
synonym: "StgExers" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000094
name: glume opening
namespace: RiceTrait
def: "The extent to which the glumes (i.e. the lemma and palea) of a floret open during blooming" [CO:curators]
synonym: "GlOp" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000098
name: fertility restoration
namespace: RiceTrait
def: "This is a compound trait used for F1 hybrids combining the proportion of fertile spikelets at maturity with the proportion of fertile pollen at anthesis" [CO:curators]
synonym: "FertRest" EXACT []
is_a: CO_320:Fertility ! Fertility
[Term]
id: CO_320:0000100
name: grain weight
namespace: RiceTrait
def: "The weight of a sample of whole grains including the hull" [CO:curators]
synonym: "GrnWt, GRWT" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000102
name: amylose content
namespace: RiceTrait
def: "Amylose content of milled rice as a proportion or percentage of the total amount of rice" [CO:curators]
synonym: "AmyCt" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000103
name: scent
namespace: RiceTrait
def: "Describes the aroma of rice grains" [CO:curators]
synonym: "Aroma, caryopsis scent" EXACT []
synonym: "Sct" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000104
name: chalkiness of endosperm
namespace: RiceTrait
def: "Describes the extent to which milled (polished, white) rice appears to be a chalky white colour as opposed to translucent white. The chalky appearance arises from the incomplete development of starch grains in the endosperm, which leaves tiny air pockets between starch granules and results in weak grains" [CO:curators]
synonym: "chalk, chalkiness" EXACT []
synonym: "Clk" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000105
name: grain elongation
namespace: RiceTrait
def: "The extend to which grains elongate during cooking. High elongation is typical of basmati types of rice" [CO:curators]
synonym: "GrElong" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000106
name: gel consistency
namespace: RiceTrait
def: "Describes the consistency of a rice gel formed by grinding, chemically treating, boiling, and cooling a sample of grains. This measures the tendency of cooked rice to harden on cooling, a function of carbohydrate composition" [CO:curators]
synonym: "GelC" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000107
name: gelatinization temperature
namespace: RiceTrait
def: "Temperature at which the starch in endosperm gelatinizes, one of the key indicators of cooking quality" [CO:curators]
synonym: "GelTemp" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000108
name: head rice
namespace: RiceTrait
def: "Describes how much of a sample of milled rice comprises whole rather than broken kernels. Head rice is defined as kernels longer than 8/10th of the average length of whole kernels" [CO:curators]
synonym: "HdR" EXACT []
synonym: "head rice percent" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000109
name: caryopsis shape
namespace: RiceTrait
def: "Shape of the caryopsis" [CO:curators]
synonym: "CaryoShp" EXACT []
synonym: "decorticated grain shape, brown rice shape" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000110
name: caryopsis length
namespace: RiceTrait
def: "The length of the caryopsis, ie the seed with seed coat fused to pericarp, which is the structure that remains after dehulling (decorticating) the grain and before milling, commonly known as brown rice" [CO:curators]
synonym: "CaryoLng" EXACT []
synonym: "decorticated grain length, brown rice length" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000111
name: brown rice protein content
namespace: RiceTrait
def: "The concentration of protein in brown (dehulled) rice" [CO:curators]
synonym: "BRiceProtCt" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000115
name: pericarp colour
namespace: RiceTrait
def: "Colour of the pericarp" [CO:curators]
synonym: "PericCol" EXACT []
synonym: "Seed coat colour, decorticated grain colour, bran colour" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000117
name: caryopsis width
namespace: RiceTrait
def: "The width of the caryopsis at its widest point at right angles to its length (ie the seed with seed coat fused to pericarp, which is the structure that remains after dehulling the grain and before milling)" [CO:curators]
synonym: "CaryoWdt" EXACT []
synonym: "decorticated grain width, brown rice width" EXACT []
is_a: CO_320:Quality ! Quality
[Term]
id: CO_320:0000121
name: sterile lemma shape
namespace: RiceTrait
def: "Shape of the sterile lemmas" [CO:curators]
synonym: "LemaShp" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000124
name: rhizome and stolon formation
namespace: RiceTrait
def: "Describes the presence of rhizomes, stolons and/or tubers in the mature plant" [CO:curators]
synonym: "RhyzForm, RHIFOR" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000128
name: panicle axis texture
namespace: Trait
def: "Texture of the main axis of the panicle" [CO:curators]
synonym: "PanAxText" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000132
name: ligule pubescence
namespace: RiceTrait
def: "Presence and distribution of hairs on ligules" [CO:curators]
synonym: "LigPub, LIGPUB" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000137
name: flag leaf width
namespace: RiceTrait
def: "Width of flag leaf" [CO:curators]
synonym: "FlgLfWdt, FLWD" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000138
name: flag leaf length
namespace: RiceTrait
def: "Length of flag leaf" [CO:curators]
synonym: "FlgLfLng, FLLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000141
name: panicle distance to basal branch
namespace: Trait
def: "Distance from the base of the panicle to the point of insertion of the lowest branch" [CO:curators]
synonym: "PanBasBrDist" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000144
name: awn thickness
namespace: RiceTrait
def: "Thickness of awns" [CO:curators]
synonym: "AwThk, AWTH" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000146
name: awn length
namespace: RiceTrait
def: "Length of awns" [CO:curators]
synonym: "AwLng, AWLT" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000150
name: anther length
namespace: RiceTrait
def: "Anther length" [CO:curators]
synonym: "AnLt" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000152
name: panicle shattering
namespace: RiceTrait
def: "Describes the tendency of grains to fall off the panicle before it is threshed" [CO:curators]
synonym: "PanSh, PSH" EXACT []
is_a: CO_320:Agronomic ! Agronomic
[Term]
id: CO_320:0000154
name: culm node underlying colour
namespace: RiceTrait
def: "Colour of nodes on the culm/stem underlying any anthocyanin markings" [CO:curators]
synonym: "CulmNodUndCol" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000155
name: culm diameter
namespace: RiceTrait
def: "Diameter of basal portion of the main culm" [CO:curators]
synonym: "CulmDiam, CUDI, DBI" EXACT []
synonym: "stem thickness, basal internode diameter" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000156
name: awn presence
namespace: RiceTrait
def: "Presence of awns" [CO:curators]
synonym: "AwPres, AWPR" EXACT []
is_a: CO_320:Morphological ! Morphological
[Term]
id: CO_320:0000158
name: pollen sterility
namespace: RiceTrait
def: "The degree of male (pollen) sterility" [CO:curators]
synonym: "male sterility" EXACT []
synonym: "MaleSter" EXACT []
is_a: CO_320:Fertility ! Fertility
[Term]
id: CO_320:0000159
name: spikelet sterility
namespace: RiceTrait
def: "The degree of sterility of spikelets" [CO:curators]
synonym: "SpkSter, SPKF, SpFert" EXACT []
is_a: CO_320:Fertility ! Fertility
[Term]
id: CO_320:0000173
name: bacterial blight damage
namespace: RiceTrait
def: "The type and severity of bacterial blight symptoms on leaves caused by the bacterial pathogen Xanthomonas oryzae pv. oryzae. Symptoms: lesions usually start near the leaf tip or leaf margins or both, and extend down the outer edge(s). Young lesions are pale green to grayish green, later turning yellow to gray (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath" [CO:curators]
synonym: "bacterial blight" EXACT []
synonym: "BBDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000174
name: bacterial leaf streak damage
namespace: RiceTrait
def: "The type and severity of bacterial leaf streak symptoms on leaves caused by the bacterial pathogen Xanthomonas oryzae pv. oryzicola. Symptoms: linear lesions with small bacterial exudates" [CO:curators]
synonym: "bacterial leaf streak, bacterial leaf blight, leaf blight" EXACT []
synonym: "BLS" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000176
name: leaf blast damage
namespace: RiceTrait
def: "The type and severity of leaf blast symptoms on leaves caused by the fungal pathogen Magnaporthe grisea (Pyricularia oryzae). Symptoms are necrotic lesions on the leaves, in severe cases leading to leaf death" [CO:curators]
synonym: "blast, leaf blast, rice leaf blast" EXACT []
synonym: "LfBlastDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000177
name: brown spot damage
namespace: RiceTrait
def: "The type and severity of brown spot symptoms on leaves caused by the fungal pathogen Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptoms: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have the same color on the edges but have a pale, usually grayish center. Most spots have a light yellow halo around the outer edge." [CO:curators]
synonym: "brown spot" EXACT []
synonym: "BS" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000178
name: false smut
namespace: RiceTrait
def: "The type and severity of false smut symptoms caused by Ustilaginoidea virens. Symptoms: Infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls." [CO:curators]
synonym: "false smut" EXACT []
synonym: "FSmut" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000179
name: grassy stunt 1 disease
namespace: RiceTrait
def: "The type and severity of grassy stunt symptoms caused by the grassy stunt 1 virus (RGSV1). Symptoms: severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots" [CO:curators]
synonym: "RGSV1Sev" EXACT []
synonym: "rice grassy stunt 1 disease" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000180
name: kernel smut
namespace: RiceTrait
def: "The type and severity of kernel smut symptoms caused by Tilletia barclayana causing kernel smut." [CO:curators]
synonym: "kernel smut" EXACT []
synonym: "KSmut" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000181
name: leaf scald damage
namespace: RiceTrait
def: "The type and severity of leaf scald symptoms on leaves caused by the fungal pathogen Monographella albescens (Microdochium oryzae). Symptoms: lesions occur mostly near leaf tips, but sometimes start at the margin of the blade and develop into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo" [CO:curators]
synonym: "leaf scald" EXACT []
synonym: "LfScald" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000182
name: narrow brown leaf spot damage
namespace: RiceTrait
def: "The type and severity of narrow brown leaf spot symptoms on leaves caused by the fungal pathogen Sphaerulina oryzina (Cercospora janseana)" [CO:curators]
synonym: "narrow brown leaf spot" EXACT []
synonym: "NBLSDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000183
name: ragged stunt disease
namespace: RiceTrait
def: "The type and severity of ragged stunt symptoms caused by rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths" [CO:curators]
synonym: "RaggedStuntSev" EXACT []
synonym: "rice ragged stunt disease, ragged stunt" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000184
name: rice tungro disease
namespace: RiceTrait
def: "The type and severity of tungro symptoms caused by the Rice tungro virus bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). Symptoms: yellow to yellow orange leaves, stunting and slightly reduced tillering" [CO:curators]
synonym: "RTungroSev" EXACT []
synonym: "tungro, tungo disease, rice tungro virus" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000185
name: sheath rot
namespace: RiceTrait
def: "The type and severity of sheath rot symptoms caused by Soracladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle, sometimes coalescing to prevent emergence of panicle." [CO:curators]
synonym: "sheath rot" EXACT []
synonym: "ShRotInc" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000186
name: stem rot
namespace: RiceTrait
def: "The type and severity of stem rot symptoms caused by Magnaporthe salvinii (Nakatea sigmoidea, Sclerotium oryzae) and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging." [CO:curators]
synonym: "stem rot" EXACT []
synonym: "StmRotInc" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000187
name: ufra
namespace: RiceTrait
def: "The type and severity of stem rot symptoms caused by the stem nematode Ditylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage, brown stains may develop on leaves and sheaths which later intensify to a dark brown color, distortion (twisting and withering) of young leaves, distortion of panicles which either remain enclosed within a swollen sheath, or partially emerge but are twisted and with unfilled grains, or emerge completely but with unfilled grains and resembling a whitehead." [CO:curators]
synonym: "ufra" EXACT []
synonym: "UfraDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000189
name: sheath blight
namespace: RiceTrait
def: "The type and severity of sheath blight symptoms caused by Thanethoporus cucumeris (Rhizoctonia solani). Symptoms: ellipsoidal, necrotic grayish-green lesions, which may enlarge and coalesce with other lesions, initially on lower leaf sheaths" [CO:curators]
synonym: "ShBltInc" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000192
name: yellow mottle disease
namespace: RiceTrait
def: "The type and severity of yellow mottle disease symptoms caused by rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowing streaking of the leaves, delayed flowering or incomplete emergence of the panicles, in extreme cases, death of plants" [CO:curators]
synonym: "yellow mottle, rice yellow mottle disease" EXACT []
synonym: "YellowMottleSev" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000193
name: hoja blanca disease
namespace: RiceTrait
def: "The type and severity of hoja blanca disease symptoms caused by rice hoja blanca virus (RHBV) causing hoja blanca. Symptoms: cream colored to yellow spots, elongating and coalescing fo form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical parrot beak shape of deformation" [CO:curators]
synonym: "hoja blanca, rice hoja blanca" EXACT []
synonym: "HojaBlancaSev" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000194
name: udbatta disease
namespace: RiceTrait
def: "The type and severity of udbatta disease symptoms caused by Balansia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods." [CO:curators]
synonym: "udbatta disease" EXACT []
synonym: "UDInc" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000195
name: bakanae disease
namespace: RiceTrait
def: "In of bakanae disease symptoms caused by Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers, and usually dies before producing grains" [CO:curators]
synonym: "bakanae disease" EXACT []
synonym: "BakInc" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000196
name: brown planthopper damage
namespace: RiceTrait
def: "The extent of damage caused by brown planthopper (Nilparvata lugens). Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy" [CO:curators]
synonym: "BPHDam" EXACT []
synonym: "brown planthopper" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000197
name: case worm damage
namespace: RiceTrait
def: "The extent of plant damage caused by caseworm (Nymphula depunctalis). Symptoms: only the papery upper epidermis of the leaf remains after larvae have fed on the internal leaf tissue" [CO:curators]
synonym: "case worm" EXACT []
synonym: "CaseWormDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000199
name: gall midge damage
namespace: RiceTrait
def: "The extent of plant damage caused by gall midge (Orseolia oryzae). Symptoms: light-colored tubular galls resembling an onion leaf on the youngest leaf of the shoot in a tiller." [CO:curators]
synonym: "gall midge" EXACT []
synonym: "GallMidgeDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000200
name: green leafhopper damage
namespace: RiceTrait
def: "The extent of damage caused by green leafhopper (Nephotettix virescens and Nephotettix cincticeps). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy." [CO:curators]
synonym: "GLhDam" EXACT []
synonym: "green leafhopper" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000201
name: leaffolder damage
namespace: RiceTrait
def: "The extent of leaf damage caused by leaffolder (Cnaphalocrosis medinalis or Marasmia patnalis). Symptoms: Larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding" [CO:curators]
synonym: "leaffolder" EXACT []
synonym: "LfFolderDam" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress
[Term]
id: CO_320:0000203
name: rice bug damage
namespace: RiceTrait
def: "The extent of plant damage caused by rice bug (Leptocorisa oratorisa)." [CO:curators]
synonym: "RBugDam" EXACT []
synonym: "rice bug" EXACT []
is_a: CO_320:Biotic_stress ! Biotic_stress