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Updated CHANGELOG
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GallVp committed Mar 4, 2024
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26 changes: 17 additions & 9 deletions CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## 1.4dev - [28-Feb-2024]
## 1.4 - [04-Mar-2024]

### `Added`

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8. Replaced custom GUNZIP module with nf-core/gunzip
9. Replaced custom gt/stat with pfr/gt/stat
10. Replaced custom fasta_validator with nf-core/fastavalidator
11. Removed BIOCODE GFF3 STATS owing to its frequent failures
12. Added pre-commit version checking
13. Now gt/stat reports extended stats and multiple distribution plots have been added to the report
14. Added a tools tab to the report which lists the tools used by the pipeline to create the report
15. Refactored and cleaned data flows for all the custom sub-workflow
16. Started using nf-core template
17. Started using semantic versioning
18. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6'
11. Added pre-commit version checking
12. Now gt/stat reports extended stats and multiple distribution plots have been added to the report
13. Added a tools tab to the report which lists the tools used by the pipeline to create the report
14. Refactored and cleaned data flows for all the custom sub-workflow
15. Started using nf-core template
16. Started using semantic versioning
17. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6'

### `Fixed`

1. All modules are now emitting versioning information
2. Fixed a bug which caused LAI to run with null assembly fasta
3. Fixed FASTA_LTRRETRIEVER_LAI sub-workflow so that it respects `monoploid_ids` parameter.

### `Dependencies`

1. NextFlow!>=23.04.0
2. nf-validation@1.1.3

### `Deprecated`

1. Removed BIOCODE GFF3 STATS owing to its frequent failures

## v1.3 [08-Feb-2023]

1. Docker engine is now also supported
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2 changes: 1 addition & 1 deletion version_check.sh
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# Check CHANGELOG version

grep "## $config_version" CHANGELOG.md >/dev/null \
grep "## $config_version - " CHANGELOG.md >/dev/null \
|| (echo 'Failed to match CHANGELOG version'; exit 1)

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